BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0146500 Os12g0146500|AK107470
(261 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600 148 2e-36
AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475 133 7e-32
AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532 132 1e-31
AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658 54 1e-07
>AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600
Length = 599
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 6/142 (4%)
Query: 95 IIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAM 154
II IE+ +P I D RD LYNML +R SLR RL+P +KN+ DP +
Sbjct: 446 IIVIERFVASPHLIGDDARDDLYNMLPASVRTSLRERLKPYSKNLSSSTVY-----DPGL 500
Query: 155 AAEWSGTVQRILGWLAPLAHNMLRWQSERNFEQRNVASSGTGVLLLQTLHFADQKKSEAA 214
A EW+ + IL WL PLAHNM++WQSER++E +++ S T ++L QTL FA+Q+K+EA
Sbjct: 501 AREWTDAMAGILEWLGPLAHNMIKWQSERSYEHQSLVSR-THIVLAQTLFFANQQKTEAI 559
Query: 215 IVELLVGLNYLWKAGRELDAKA 236
I ELLVGLNY+W+ GREL+AKA
Sbjct: 560 ITELLVGLNYVWRFGRELNAKA 581
>AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475
Length = 474
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 95/145 (65%), Gaps = 13/145 (8%)
Query: 95 IIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAM 154
I+ +EK+ P+ + D RD LY+ML +R+SLR+RL+ + D +
Sbjct: 328 IVVMEKMIKQPQLVGLDARDDLYSMLPASVRSSLRSRLKGVG----------FTATDGGL 377
Query: 155 AAEWSGTVQRILGWLAPLAHNMLRWQSERNFEQRNVAS---SGTGVLLLQTLHFADQKKS 211
A EW + RIL WL PLA NM+RWQSER+FEQ+++A+ S V+L+QTL FAD+ K+
Sbjct: 378 ATEWKAALGRILRWLLPLAQNMIRWQSERSFEQQHMATATNSQNRVMLVQTLVFADKVKT 437
Query: 212 EAAIVELLVGLNYLWKAGRELDAKA 236
EAAI ELLVGLNY+W+ RE+ AKA
Sbjct: 438 EAAITELLVGLNYIWRFEREMTAKA 462
>AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532
Length = 531
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 86/131 (65%), Gaps = 8/131 (6%)
Query: 95 IIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAM 154
+I +EKL P I + RD LY ML ++ +L+A LR KN+ D +
Sbjct: 374 VIVVEKLLKYPHLIGEEARDDLYQMLPTSLKTTLKASLRSYLKNISIY--------DAPL 425
Query: 155 AAEWSGTVQRILGWLAPLAHNMLRWQSERNFEQRNVASSGTGVLLLQTLHFADQKKSEAA 214
A +W T+ IL WLAPLAHNM+RWQSERNFEQ+N T VLLLQTL+FAD++K+EAA
Sbjct: 426 AHDWKETIDGILSWLAPLAHNMIRWQSERNFEQQNQIVKRTNVLLLQTLYFADREKTEAA 485
Query: 215 IVELLVGLNYL 225
I +LLVGLNY+
Sbjct: 486 ICKLLVGLNYI 496
>AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658
Length = 657
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 20/121 (16%)
Query: 113 RDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAMAAEWSGTVQRILGWLAPL 172
RDALY L I+++LR+R++ P + AE T+Q WL P+
Sbjct: 411 RDALYQGLPPSIKSALRSRIQSF--------QVKEELTVPQIKAEMEKTLQ----WLVPV 458
Query: 173 AHNMLR------WQSE--RNFEQRNVASSGTGVLLLQTLHFADQKKSEAAIVELLVGLNY 224
A N + W E + + N +G +L + TLH AD++K+EA I++L+V L++
Sbjct: 459 ATNTTKAHHGFGWVGEWASSGSEANQRPAGQTILRIDTLHHADKEKTEAYILDLVVWLHH 518
Query: 225 L 225
L
Sbjct: 519 L 519
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,285,131
Number of extensions: 190988
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 4
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)