BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0144000 Os12g0144000|J043001D09
         (110 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03250.2  | chr1:793576-795159 REVERSE LENGTH=252              101   8e-23

>AT1G03250.2 | chr1:793576-795159 REVERSE LENGTH=252
          Length = 251

 Score =  101 bits (251), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 62/81 (76%), Gaps = 4/81 (4%)

Query: 2  ADLLRREEEFYASLFDSPKGGDAVKSRGQMIERKIEVLEDMATKVSNRRSRRWLNDRLLI 61
           +++RR+E    SL   P+ GD   SRG  +E+KIE LE +A +VSNRRSRRWLNDR+L+
Sbjct: 4  TNVMRRDE----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLNDRILM 59

Query: 62 ELVPRLHVEEIKGLFAPPPWG 82
          ELVPRL  +EI+GLFAPPPWG
Sbjct: 60 ELVPRLDAQEIRGLFAPPPWG 80



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,542,016
Number of extensions: 91452
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)