BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0143800 Os12g0143800|AK110641
(344 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22880.1 | chr3:8097948-8100740 REVERSE LENGTH=345 566 e-162
AT5G20850.1 | chr5:7070758-7072860 REVERSE LENGTH=343 350 5e-97
AT2G45280.2 | chr2:18670103-18672041 FORWARD LENGTH=388 116 2e-26
AT5G57450.1 | chr5:23274008-23274922 REVERSE LENGTH=305 93 2e-19
AT2G28560.1 | chr2:12237052-12239086 REVERSE LENGTH=372 82 6e-16
AT1G07745.1 | chr1:2400797-2402842 REVERSE LENGTH=323 71 1e-12
>AT3G22880.1 | chr3:8097948-8100740 REVERSE LENGTH=345
Length = 344
Score = 566 bits (1459), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/344 (79%), Positives = 304/344 (88%)
Query: 1 MAPSKQYSEGGQLQLMDAXXXXXXXXXXXSIDKLISQGINSGDVKKLQDAGIYTCNGLMM 60
M S + E Q+QL++ IDKLI+QGIN+GDVKKLQ+AGI+TCNGLMM
Sbjct: 1 MMASLKAEETSQMQLVEREENDEDEDLFEMIDKLIAQGINAGDVKKLQEAGIHTCNGLMM 60
Query: 61 HTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFITGSDLLIKRKSVVRITTGSQALDKLLG 120
HTKK+LTGIKGLSEAKVDKICEAAEK+++ G++TGSD LIKRKSVV+ITTG QALD LLG
Sbjct: 61 HTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITTGCQALDDLLG 120
Query: 121 GGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPI 180
GGIET ITEAFGEFRSGKTQLAHTLCV+ QLP +M GGNGKVAYIDTEGTFRP+RIVPI
Sbjct: 121 GGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPI 180
Query: 181 AERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSG 240
AERFGMD AVLDNIIYARAYTYEHQYNLLLGLAAKM+EEPFR+LIVDS+IALFRVDF+G
Sbjct: 181 AERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTG 240
Query: 241 RGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHA 300
RGELA+RQQKLAQMLSRL KIAEEFNVAVY+TNQVIADPGGGMFI+D KKPAGGHVLAHA
Sbjct: 241 RGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHA 300
Query: 301 ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD 344
ATIRL+ RKGKG+ RVCK++DAPNL E EA FQ+T GGI DAKD
Sbjct: 301 ATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADAKD 344
>AT5G20850.1 | chr5:7070758-7072860 REVERSE LENGTH=343
Length = 342
Score = 350 bits (899), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 174/315 (55%), Positives = 226/315 (71%), Gaps = 1/315 (0%)
Query: 31 IDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQ 90
+++L + GI S DVKKL+DAG+ T G+ +K L IKG+S+AKVDKI EAA KL+
Sbjct: 28 VEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKDLLQIKGISDAKVDKIVEAASKLVPL 87
Query: 91 GFITGSDLLIKRKSVVRITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSA 150
GF + S L +R+ +++IT+GS+ LDK+L GGIET ITE +GEFRSGKTQL HTLCV+
Sbjct: 88 GFTSASQLHAQRQEIIQITSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTC 147
Query: 151 QLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLL 210
QLP+ GG GK YID EGTFRP+R++ IA+RFG++ VL+N+ YARAY +HQ LL
Sbjct: 148 QLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 207
Query: 211 LGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVY 270
L A+ M E F LLIVDS AL+R DFSGRGEL+ RQ LA+ L L K+A+EF VAV
Sbjct: 208 LEAASMMIETRFALLIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267
Query: 271 ITNQVIAD-PGGGMFITDLKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGE 329
ITNQV+A G +F KP GG+++AHA T RL LRKG+ E+R+CK+ +P LPE E
Sbjct: 268 ITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPEAE 327
Query: 330 AVFQVTSGGIMDAKD 344
A FQ+++ G+ D KD
Sbjct: 328 ARFQISTEGVTDCKD 342
>AT2G45280.2 | chr2:18670103-18672041 FORWARD LENGTH=388
Length = 387
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 145/286 (50%), Gaps = 28/286 (9%)
Query: 78 DKICEAAEKLLSQGFITGSDLLIKRKSVVRITTGSQALDKLLGGGIETLCITEAFGEFRS 137
++ C + L G D+L + +S+ RITT LD +LGGGI +TE G
Sbjct: 99 NQSCCNGSRSLINGAKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGI 158
Query: 138 GKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAE--------------- 182
GKTQ+ L V+ Q+P G GK YIDTEG+F ER + IAE
Sbjct: 159 GKTQIGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHK 218
Query: 183 -----RFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAE-EPFRLLIVDSVIALFRV 236
+ M +L+NI Y R +Y Q L+ L ++E + +++IVDS+ FR
Sbjct: 219 HFQANQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQ 278
Query: 237 DFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHV 296
D+ +LA+R + L++M + K+A++F++AV + NQV G F L A G
Sbjct: 279 DYD---DLAQRTRVLSEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSFQLAL---ALGDS 332
Query: 297 LAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDA 342
+H+ T R++L G++R I +P+LP A + VTS G+ ++
Sbjct: 333 WSHSCTNRVIL-YWNGDERYAYIDKSPSLPSASASYTVTSRGLRNS 377
>AT5G57450.1 | chr5:23274008-23274922 REVERSE LENGTH=305
Length = 304
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 47/299 (15%)
Query: 88 LSQGFITGSDLLIKRKSVVRITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLC 147
+ G I +LL + + ++TTG + LD L GGI +TE E GKTQL L
Sbjct: 1 MQNGKIKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLS 60
Query: 148 VSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV--------LDNIIYAR 199
+ QLPI G NG Y+ +E F R+ ++ F ++ D++
Sbjct: 61 LCTQLPISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQN 120
Query: 200 AYTYEHQYNLLLGLAAKMAEE----PFRLLIVDSVIALFRVDFSGR-GELAERQQKLAQM 254
++ +H ++++ + + P +L+++DSV ALFR +F +L +R ++
Sbjct: 121 VHSVDHLFDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKI 180
Query: 255 LSRLTKIAEEFNVAVYITNQV-----IADPGGGMFITDLKK---------PAGGHVLAHA 300
+L ++A +F++A+ ITNQV +D G+ I +L+ P+ G A+
Sbjct: 181 SGKLKQLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANC 240
Query: 301 ATIRLMLRKGKGE--------------------QRVCKIFDAPNLPEGEAVFQVTSGGI 339
R + + G +R I +P LP F +T GI
Sbjct: 241 VNSRFFISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGI 299
>AT2G28560.1 | chr2:12237052-12239086 REVERSE LENGTH=372
Length = 371
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 107 RITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYI 166
+ T + LD L GGI +TE G GK+Q L +SA P+ G +G+V YI
Sbjct: 83 HLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142
Query: 167 DTEGTFRPERIVPIA-ERF-------GMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMA 218
D E F R++ + E F GM A + I+ R + + + L +
Sbjct: 143 DVESKFSSRRVIEMGLESFPEVFHLKGM-AQEMAGRILVLRPTSLANFTESIQELKNSIL 201
Query: 219 EEPFRLLIVDSVIALFRVDFSGRGEL-AERQQKLAQMLSRLTKIAEEFNVAVYITNQVIA 277
+ +LL++DS+ AL SG + A+RQ +L +S L +AE + + +TNQV +
Sbjct: 202 QNQVKLLVIDSMTAL----LSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRS 257
Query: 278 ----DPGGGMF-------ITDLKKPAGGHVL-------AHAATIRLMLRKGKGEQRVCKI 319
+ F D K H++ AHA TIRL+L G QR+ K+
Sbjct: 258 QNRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKSG-QRIIKV 316
Query: 320 FDAPNLPEGEAVFQVTSGGI 339
+P P F +TS GI
Sbjct: 317 AKSPMSPPLAFPFHITSAGI 336
>AT1G07745.1 | chr1:2400797-2402842 REVERSE LENGTH=323
Length = 322
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 127/310 (40%), Gaps = 46/310 (14%)
Query: 51 GIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLS------QGFITGSDLLIK-RK 103
GI T ++H LT + D++ E +LS + + G LL +
Sbjct: 26 GILTIEDFLLHDLYELTAFSQ-RQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDLHR 84
Query: 104 SVVRITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPI---HMHGGN 160
+ ++TG + D LL GG +TE G SGKTQ C+ A + H+
Sbjct: 85 NKHTLSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQ----FCMQAAASVAENHL---- 136
Query: 161 GKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYAR--AYTYEHQYNLL-------- 210
G+V Y+DT +F R IA+ ++A L + +R +T Y L
Sbjct: 137 GRVLYLDTGNSFSARR---IAQFICSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEI 193
Query: 211 -LGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLS---RLTKIAEEFN 266
L L + E RLL+VDS+ +L G G Q A M++ L K+A E +
Sbjct: 194 TLRLQMNVNESRLRLLVVDSISSLITPILGGSGS-----QGRALMVAIGYLLKKLAHEHS 248
Query: 267 VAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML-RKGKGEQRVCKIFDAPNL 325
+A+ +TN + G G KPA G +RL L R K I +L
Sbjct: 249 IAILVTNHTVGAGGEG----GKTKPALGETWKSIPHVRLSLSRDHKNSNCTISILKHTSL 304
Query: 326 PEGEAVFQVT 335
P G+A +T
Sbjct: 305 PSGQAAKTLT 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,840,680
Number of extensions: 276965
Number of successful extensions: 549
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 6
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)