BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0141900 Os12g0141900|AK121490
(101 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22050.1 | chr1:7771897-7772843 FORWARD LENGTH=120 96 4e-21
AT1G77870.1 | chr1:29285177-29285714 FORWARD LENGTH=121 83 2e-17
AT3G26980.1 | chr3:9946467-9947444 REVERSE LENGTH=121 75 7e-15
AT5G15460.1 | chr5:5018947-5020105 REVERSE LENGTH=125 75 7e-15
AT3G01050.1 | chr3:13854-14675 FORWARD LENGTH=118 72 9e-14
AT4G24990.1 | chr4:12849973-12851249 REVERSE LENGTH=119 69 5e-13
>AT1G22050.1 | chr1:7771897-7772843 FORWARD LENGTH=120
Length = 119
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Query: 16 STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRV-EVPGGVIT 74
S TVS+LKE ++++WP+DKE TPKTVND+KLINAG+ILENNRTL ESR+ V E+PG +IT
Sbjct: 28 SMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIIT 87
Query: 75 MHVVVHPPQSD 85
MH+V+ P D
Sbjct: 88 MHIVLRLPTLD 98
>AT1G77870.1 | chr1:29285177-29285714 FORWARD LENGTH=121
Length = 120
Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
Query: 18 TVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRV---EVPGGVIT 74
TV++LKE I+A+WP+DKE PK +N++KLIN G+ILENN+TL E+R + E+PG V T
Sbjct: 29 TVASLKEKIIAQWPKDKENAPKMINEVKLINGGKILENNKTLSEARSLITIGELPGIVTT 88
Query: 75 MHVVVHPP 82
MHVV+ PP
Sbjct: 89 MHVVLRPP 96
>AT3G26980.1 | chr3:9946467-9947444 REVERSE LENGTH=121
Length = 120
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 16 STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRV-EVPGGVIT 74
+ TVS LKE I++ WP+DK+I PK+ +D+KLINAG+ILEN +T+ + + ++P VIT
Sbjct: 27 TATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILENGKTVAQCKAPFDDLPKSVIT 86
Query: 75 MHVVVH 80
MHVVV
Sbjct: 87 MHVVVQ 92
>AT5G15460.1 | chr5:5018947-5020105 REVERSE LENGTH=125
Length = 124
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 16 STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRV-EVPGGVIT 74
+TTV+ LKE ++A+WP+DKE PKTV D+KLI+AGRILENN+T+ + R V G V T
Sbjct: 28 ATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRILENNKTVGDCRSPVGNFSGAVTT 87
Query: 75 MHVVVH 80
MHV++
Sbjct: 88 MHVIIQ 93
>AT3G01050.1 | chr3:13854-14675 FORWARD LENGTH=118
Length = 117
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 16 STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRVE-VPGGVIT 74
+TTVSALKE +++ WP++KE PKTV ++KLI+AG++LEN++T+ + R V + G V T
Sbjct: 28 ATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 87
Query: 75 MHVVVHPP 82
MHV++ P
Sbjct: 88 MHVIIQAP 95
>AT4G24990.1 | chr4:12849973-12851249 REVERSE LENGTH=119
Length = 118
Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 16 STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRV-EVPGGVIT 74
++TV LK+ +++ WP+ K + PK +N++KLI++G+ILENN+T+ + + ++ GGVI
Sbjct: 27 ASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKILENNKTVGQCKTPFGDIAGGVIV 86
Query: 75 MHVVVHP 81
MHVVV P
Sbjct: 87 MHVVVQP 93
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,983,733
Number of extensions: 62031
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 6
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)