BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0135200 Os12g0135200|J090001E19
         (415 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26960.1  | chr5:9484908-9486149 REVERSE LENGTH=414            179   2e-45

>AT5G26960.1 | chr5:9484908-9486149 REVERSE LENGTH=414
          Length = 413

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/419 (33%), Positives = 189/419 (45%), Gaps = 16/419 (3%)

Query: 4   AESCHSRSLSWLVKSCIPADPARHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECLA 63
           +E+C+SR  SWL+KSC+P +P+                                  EC++
Sbjct: 2   SENCNSRHFSWLMKSCLP-NPS---DAKSLVQIHQPSSTAANSSATIASLPDDLLLECIS 57

Query: 64  RVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLRFES 123
           RVP +SIP L  V RR++ LL S  FLHLRR    LR SL  +S  D+G  A A L+F+S
Sbjct: 58  RVPSSSIPSLAVVCRRWSRLLHSPYFLHLRRRLGLLRHSLFAISTVDSGLFA-ADLQFQS 116

Query: 124 SXXXXXXXXXXXXXXXXHCGG-SVFAHARAVVLGRDVFLIGRGATLRVDALTGAARACAP 182
                              G     +HARA  +G  V+++ R A LR D+  G     +P
Sbjct: 117 EIASWKVSLAVSSRSVGVDGSYGSLSHARAAAIGPRVYVVSRNAVLRYDSWMGTLNLRSP 176

Query: 183 TLFPRKKFAAAAVGDRIYVA---GGSARTAVVEEYDPEADAWRVVGEAPRRRYGCXXXXX 239
            +FPRKKFA A V  +IYVA   GGS   A VEEYDPE + W VV ++ R+RYGC     
Sbjct: 177 MIFPRKKFAIAVVSGKIYVAGGGGGSEVAAAVEEYDPELNRWEVVTQSARKRYGCIGAAV 236

Query: 240 XXXXXXXXXXXXXXXXXXXLEAHVCAGSVDALHVASGAWARPRALPXXXXXXXXXXXXDH 299
                              + A   A S+D   V S  W R R++P             +
Sbjct: 237 DGVFYVIGGLKIGNETSRAVAARAYASSMDLFDVESRQWLRSRSVPGGGCVVAACAAVGY 296

Query: 300 LYMVASHAVELSFWRWCXXXXXXXXXXXXXXXVALEAPPMPRGSVGLGMAVRVAMAGLGT 359
           +Y++ SHAVELSFWR+                  L++PP+P   V L   VR +  G+  
Sbjct: 297 VYVLTSHAVELSFWRFDARRRGGNSGFGEWQR--LKSPPLP-AQVRLDGTVRFSCVGVED 353

Query: 360 N----RXXXXXXXXXXRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVE 414
                +          R      G  E +VL+YD   G+W RA DLP    RAACA VE
Sbjct: 354 KVAVVQVVGCIDDLLRRSGRGERGIRESLVLLYDTTEGEWRRAADLPEMITRAACACVE 412



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,498,858
Number of extensions: 188643
Number of successful extensions: 673
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,337,553
Effective search space: 2617991642
Effective search space used: 2617991642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)