BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0132800 Os12g0132800|AF543419
(470 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479 531 e-151
AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485 505 e-143
AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487 489 e-138
AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810 77 3e-14
>AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479
Length = 478
Score = 531 bits (1368), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/473 (54%), Positives = 334/473 (70%), Gaps = 6/473 (1%)
Query: 2 AEPPATKVYHDGCPGCAMEQRKEEHKGIPYREFLFVAITTXXXXXXXXXXXXXXYFMIRD 61
AE K +H+ C GC ++Q K +G P+ E V I YFMI D
Sbjct: 6 AECLLEKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDD 65
Query: 62 LHVARTEEDIGFYAGFLGASYMIGRGFASILWGMVADRIGRKPVIIFSIFAVIVLNTLFG 121
++A+ EEDIGFYAGF+G S+M+GR F S+ WG+VADR GRKPVI+ +V+V NTLFG
Sbjct: 66 FNIAKKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFG 125
Query: 122 LSVKYWMAVTTRFLLGALNGLLAPIKAYSIEVCRAEHQPLGLSIVSTAWGIGLVVGPATG 181
LS+ +WMA+ TRF LG+ NGLL PIKAY++E+ R E+Q L LS VSTAWGIGL++GPA G
Sbjct: 126 LSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIG 185
Query: 182 GYLAQPVKQYPHIFHEKSIFGRFPYLLPCLCISLFALLVLLSCIWLPETLHKHK-----G 236
G+LAQP KQYP +F + SIFG+FP+ LPCL IS+FA LV + +PETLH HK
Sbjct: 186 GFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDES 245
Query: 237 LEVGVETAEASTTQESAESHQKS-LFRNWPLMSSIVTYCVFSLHDTAYSEIFSLWTVSDR 295
+ + ++ + + AE + KS L NWPL+SSI+ YCVFSLHD AY+EIFSLW S R
Sbjct: 246 YDALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPR 305
Query: 296 KYGGLSFSSKDVGQVLAVAGASLLVYQLFIYGWVDKILGPIHSTRISAALSVPIIAAYPF 355
KYGGL +S+ DVG VLA +G LL++QL +Y + +++LGPI TRIS +L++ +++ YP
Sbjct: 306 KYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPL 365
Query: 356 MTHLSGIRLGVALYSAAMIKSVLAITIITGTSLLQNKAVPQGQRGAANGIATTAMSLFKA 415
+ LSG+ L V + SA++ KSVL + ITG +LQNKAV Q QRGAANGIA TAMSLFKA
Sbjct: 366 IAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKA 425
Query: 416 IAPAGAGVIFSWAQKRQHVAFFPGDQMVFLLLNLTEVIGLMLTFKPFLAVPQQ 468
I PA AG+IFSW++KRQ AF PG QMVF +LN+ +G++LTFKPFLA QQ
Sbjct: 426 IGPAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478
>AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485
Length = 484
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/471 (50%), Positives = 332/471 (70%), Gaps = 14/471 (2%)
Query: 11 HDGCPGCAMEQRKEEHKGIPYREFLFVAITTXXXXXXXXXXXXXXYFMIRDLHVARTEED 70
++ CPGC +++ K++ +G+PY F+ + + YFMIRD H+A+ EED
Sbjct: 14 NEDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEED 73
Query: 71 IGFYAGFLGASYMIGRGFASILWGMVADRIGRKPVIIFSIFAVIVLNTLFGLSVKYWMAV 130
IGFYAGF+G+S+MIGR SI WG +ADR GRKP+I+ F+VI+ NTLFGLS +W+A+
Sbjct: 74 IGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAI 133
Query: 131 TTRFLLGALNGLLAPIKAYSIEVCRAEHQPLGLSIVSTAWGIGLVVGPATGGYLAQPVKQ 190
+ RFLLG N LL I+AY+ EV E+ L LS+VST+ GIGL++GPA GGYLAQP ++
Sbjct: 134 SVRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEK 193
Query: 191 YPHIFHEKSIFGRFPYLLPCLCISLFALLVLLSCIWLPETLH--------KHKGLEVGVE 242
YP+IF + S+FGRFPY LP L IS++A VL++C WLPETLH + E+ +
Sbjct: 194 YPNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDD 253
Query: 243 TAEASTTQESAESHQKSLFRNWPLMSSIVTYCVFSLHDTAYSEIFSLWTVSDRKYGGLSF 302
+ E ++ SL RN PLM+ I+ YCVFSL + AY+EIFSLW VSDR YGGLSF
Sbjct: 254 ESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313
Query: 303 SSKDVGQVLAVAGASLLVYQLFIYGWVDKILGPIHSTRISAALSVPIIAAYPFMTHLSGI 362
SS+DVG+VLA++G LLV+QL +Y ++K +G + R+SA L +P+++ YP++ LSG+
Sbjct: 314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGV 373
Query: 363 RLGVALYSAAMIKSVLAITIITGTSLLQNKAVPQGQRGAANGIATTAMSLFKAIAPAGAG 422
L + + A++IK+ L+I+++TG ++ NKAVPQ QRGAANGI+ TAMS+FK+ PAG G
Sbjct: 374 TLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGG 433
Query: 423 VIFSWAQKRQHVAFFPG------DQMVFLLLNLTEVIGLMLTFKPFLAVPQ 467
V+FSWAQKRQ F PG D+MVFL+LNL +++GL+LTF P+++ Q
Sbjct: 434 VLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYISQIQ 484
>AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487
Length = 486
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/472 (51%), Positives = 325/472 (68%), Gaps = 13/472 (2%)
Query: 10 YHDGCPGCAMEQRKEEHKGIPYREFLFVAITTXXXXXXXXXXXXXXYFMIRDLHVARTEE 69
YHDGCPGC +EQ K+ +G PY E FV I Y+MI D VA+TE+
Sbjct: 15 YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLYYMIEDFGVAKTEK 74
Query: 70 DIGFYAGFLGASYMIGRGFASILWGMVADRIGRKPVIIFSIFAVIVLNTLFGLSVKYWMA 129
DIGFYAGF+G S+M+GR S+ WG+VADR GRKP+I+ ++ + N LFGLS +WMA
Sbjct: 75 DIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIFNALFGLSSNFWMA 134
Query: 130 VTTRFLLGALNGLLAPIKAYSIEVCRAEHQPLGLSIVSTAWGIGLVVGPATGGYLAQPVK 189
+ TRFLLG+ N LL +KAY+ E+ R E+Q +S VSTAWGIGL++GPA GG+LAQP
Sbjct: 135 IGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLIIGPALGGFLAQPAD 194
Query: 190 QYPHIFHEKSIFGRFPYLLPCLCISLFALLVLLSCIWLPETLHKHKG-----------LE 238
+YP++F ++S+FGRF Y LPC IS FALLV + C ++PETLH HK LE
Sbjct: 195 KYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKLDSLSHDDSYDILE 254
Query: 239 VGVETAEASTTQESAESHQ--KSLFRNWPLMSSIVTYCVFSLHDTAYSEIFSLWTVSDRK 296
+ ST + + +SL +NWPLMSSI+ YCV LHDTAYSEIF+LW S RK
Sbjct: 255 AASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAYSEIFALWANSPRK 314
Query: 297 YGGLSFSSKDVGQVLAVAGASLLVYQLFIYGWVDKILGPIHSTRISAALSVPIIAAYPFM 356
YGGLS+S+ +VG VLA++G L +Q+F+Y +K+LGP+ TR + AL +PI +YPF+
Sbjct: 315 YGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGALMIPIQMSYPFI 374
Query: 357 THLSGIRLGVALYSAAMIKSVLAITIITGTSLLQNKAVPQGQRGAANGIATTAMSLFKAI 416
LSG+ L + L A+++ +VL+++ ITG +LQN+AV Q QRGAANGIA TAMSLFK +
Sbjct: 375 AGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANGIAMTAMSLFKTV 434
Query: 417 APAGAGVIFSWAQKRQHVAFFPGDQMVFLLLNLTEVIGLMLTFKPFLAVPQQ 468
PAGAG++FSW+++R + AF PG MVF +LN+ V+G+ LTFKPFL ++
Sbjct: 435 GPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFLTTSRR 486
>AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810
Length = 809
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 16/86 (18%)
Query: 260 LFRNWPLMSSIVTYCVFSLHDTAYSEIFSLWTVSDRKYGGLSFSSKDVGQVLAVAGASLL 319
L NWPLMSSI+ YC+ LH+TAYSEIF+LW S R+YGGL +
Sbjct: 159 LLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGL----------------GIF 202
Query: 320 VYQLFIYGWVDKILGPIHSTRISAAL 345
+Q+F+Y ++LGP+ T + AL
Sbjct: 203 FFQVFVYPLAKRLLGPVLVTHFAEAL 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,267,336
Number of extensions: 353137
Number of successful extensions: 1055
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1048
Number of HSP's successfully gapped: 4
Length of query: 470
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 368
Effective length of database: 8,310,137
Effective search space: 3058130416
Effective search space used: 3058130416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)