BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0128800 Os12g0128800|AK103721
(571 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10740.1 | chr3:3361031-3364573 REVERSE LENGTH=679 662 0.0
AT5G26120.1 | chr5:9121835-9125399 REVERSE LENGTH=675 642 0.0
>AT3G10740.1 | chr3:3361031-3364573 REVERSE LENGTH=679
Length = 678
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/574 (56%), Positives = 403/574 (70%), Gaps = 10/574 (1%)
Query: 2 FEAGANT--SNIDPWSIIGDESSVHVTTDRSSCFSQNPVAVRIEVVCDD--CPAGGVGIY 57
FEAG SNI PWSI+GD SS++V TDRSSCF +N +A+R++V+CD CP+GGVG+Y
Sbjct: 85 FEAGGQNTPSNIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLCDSKGCPSGGVGVY 144
Query: 58 NPGFWGMNVEEGKAYNLVMHIRSLESVELTASLTCSNGSQNLASNSV--RETNLSTWTKI 115
NPG+WGMN+EEGK Y + +++RS ++L+ SLT SNGS+ LAS + +++S W K
Sbjct: 145 NPGYWGMNIEEGKKYKVALYVRSTGDIDLSVSLTSSNGSRTLASEKIIASASDVSKWIKK 204
Query: 116 ELQLLAQGTCRTSRLELTTRKRGVIWLDQVSLMPSETYKGHGFRKELMYMLLDLKPRFLR 175
E+ L A+ T ++RL+LTT K+G IW+DQVS MP +T+KGHGFR +L M+ D+KPRF+R
Sbjct: 205 EVLLEAKATDPSARLQLTTTKKGSIWIDQVSAMPVDTHKGHGFRNDLFQMMADIKPRFIR 264
Query: 176 FPGGCFVEGNWLKNAFRWKETIGPWEERPGHYGDVWHYWTXXXXXXXXXXXXXXXXXXNP 235
FPGGCFVEG WL NAFRWKET+GPWEERPGH+GDVW YWT P
Sbjct: 265 FPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFFQMAEDIGAAP 324
Query: 236 VWVLNIGMSHHDAVNGTMLAPFIKDATDSLEFAKGSDKSTWGSVRATMGHPEPFPLKYVA 295
+WV N G+SH+D V + PF+++A D +EFA+G STWGSVRA MG EPF LKYVA
Sbjct: 325 IWVFNNGISHNDEVETASIMPFVQEALDGIEFARGDANSTWGSVRAKMGRQEPFELKYVA 384
Query: 296 LGNEDCAPFKLIYRENYPKFYNAIKEAYPDIQIISNCDGSSGPLDHPADLYDYHIYENAS 355
+GNEDC K YR NY FY+AIK+AYPDI+IISNCDGSS PLDHPAD YDYHIY +AS
Sbjct: 385 IGNEDCG--KTYYRGNYIVFYDAIKKAYPDIKIISNCDGSSHPLDHPADYYDYHIYTSAS 442
Query: 356 TVFFKKNEFDRTSRNGPKVFVSEYAVNGEDAGNGXXXXXXXXXXXXIGLEKNSDVVQMAC 415
+F ++FDRTSR GPK FVSEYAV G+DAG G IGLEKNSD+V+MA
Sbjct: 443 NLFSMYHQFDRTSRKGPKAFVSEYAVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMAS 502
Query: 416 YAPLFVNDNDRVWNPDAIVFNSWQQYGTPSYWMQTYFRESSGAMIHPIMIXXXXXXXXXX 475
YAPLFVN NDR WNPDAIVFNS YGTPSYW+Q +F ESSGA + +
Sbjct: 503 YAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL-KGNSTSLVA 561
Query: 476 XXITWQDAENTFLRVKIVNFGPNAVNLTISSSGLQAGV-DTAKSTVTVLTSSNLLDENSF 534
I+W++ ++R+K VNFG N+ N+ + +GL V + S TVLTS+N++DENSF
Sbjct: 562 SAISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSF 621
Query: 535 SEPNKVVPVASELPNAAEQMQVLHFPYSICSFDL 568
S+P KVVP S L A E M V+ P+S SFDL
Sbjct: 622 SQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDL 655
>AT5G26120.1 | chr5:9121835-9125399 REVERSE LENGTH=675
Length = 674
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/575 (55%), Positives = 397/575 (69%), Gaps = 14/575 (2%)
Query: 2 FEAGANT--SNIDPWSIIGDESSVHVTTDRSSCFSQNPVAVRIEVVCDD--CPAGGVGIY 57
FEAG SNI PWSIIGDESS++V TDRSSCF +N +A+R+EV+CD CP GGVG+Y
Sbjct: 84 FEAGGQIIPSNIWPWSIIGDESSIYVVTDRSSCFERNKIALRMEVLCDSNSCPLGGVGVY 143
Query: 58 NPGFWGMNVEEGKAYNLVMHIRSLESVELTASLTCSNGSQNLASNSV--RETNLSTWTKI 115
NPG+WGMN+EEGK Y +V+++RS ++++ S T SNGS LAS ++ ++L WTK
Sbjct: 144 NPGYWGMNIEEGKKYKVVLYVRSTGDIDVSVSFTSSNGSVTLASENIIALASDLLNWTKK 203
Query: 116 ELQLLAQGTCRTSRLELTTRKRGVIWLDQVSLMPSETYKGHGFRKELMYMLLDLKPRFLR 175
E+ L A GT +RL+ TT K+G IW DQVS MP +TYKGHGFR +L M++DLKPRF+R
Sbjct: 204 EMLLEANGTDNGARLQFTTTKKGSIWFDQVSAMPMDTYKGHGFRNDLFQMMVDLKPRFIR 263
Query: 176 FPGGCFVEGNWLKNAFRWKETIGPWEERPGHYGDVWHYWTXXXXXXXXXXXXXXXXXXNP 235
FPGGCFVEG+WL NAFRWKET+ WEERPGHYGDVW YWT +P
Sbjct: 264 FPGGCFVEGDWLGNAFRWKETVRAWEERPGHYGDVWKYWTDDGLGHFEFFQLAEDLGASP 323
Query: 236 VWVLNIGMSHHDAVNGTMLAPFIKDATDSLEFAKGSDKSTWGSVRATMGHPEPFPLKYVA 295
+WV N G+SH+D V + PF+++A D +EFA+G STWGSVRA MGHPEPF LKYVA
Sbjct: 324 IWVFNNGISHNDQVETKNVMPFVQEAIDGIEFARGDSNSTWGSVRAAMGHPEPFELKYVA 383
Query: 296 LGNEDCAPFKLIYRENYPKFYNAIKEAYPDIQIISNCDGSSGPLDHPADLYDYHIYENAS 355
+GNEDC FK YR NY +FYNAIK+AYPDI+IISNCD S+ PLDHPAD +DYHIY A
Sbjct: 384 VGNEDC--FKSYYRGNYLEFYNAIKKAYPDIKIISNCDASAKPLDHPADYFDYHIYTLAR 441
Query: 356 TVFFKKNEFDRTSRNGPKVFVSEYAVNGEDAGNGXXXXXXXXXXXXIGLEKNSDVVQMAC 415
+F K ++FD T RNGPK FVSEYAVN DA NG +GLEKNSD+V+M
Sbjct: 442 DLFSKSHDFDNTPRNGPKAFVSEYAVNKADAKNGNLLAALGEAAFLLGLEKNSDIVEMVS 501
Query: 416 YAPLFVNDNDRVWNPDAIVFNSWQQYGTPSYWMQTYFRESSGAMIHPIMIXXXXXXXXXX 475
YAPLFVN NDR W PDAIVFNS YGTPSYW+Q +F ESSGA + +
Sbjct: 502 YAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTL-KGKTSSVEA 560
Query: 476 XXITWQDAENTFLRVKIVNFGPNAVNLTISSSGLQAGVDTAKSTVTVLTSSNLLDENSFS 535
I++Q ++++K VNFG +VNL ++ +GL A +K VLTS++++DENSFS
Sbjct: 561 SAISFQTNGKDYIQIKAVNFGEQSVNLKVAVTGLMAKFYGSKK--KVLTSASVMDENSFS 618
Query: 536 EPNKVVPVAS--ELPNAAEQMQVLHFPYSICSFDL 568
PN +VP S E+ + M VL P+S SFDL
Sbjct: 619 NPNMIVPQESLLEMTEQEDLMFVLP-PHSFSSFDL 652
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,308,380
Number of extensions: 501843
Number of successful extensions: 954
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 2
Length of query: 571
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 467
Effective length of database: 8,255,305
Effective search space: 3855227435
Effective search space used: 3855227435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)