BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0126200 Os12g0126200|AK099983
(320 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03610.1 | chr3:869479-871687 FORWARD LENGTH=324 317 5e-87
AT3G60260.1 | chr3:22274303-22276839 FORWARD LENGTH=267 239 2e-63
AT2G44770.1 | chr2:18457817-18459886 FORWARD LENGTH=267 235 2e-62
AT1G03620.1 | chr1:904319-906013 REVERSE LENGTH=266 223 1e-58
AT1G67400.1 | chr1:25248099-25250664 REVERSE LENGTH=282 218 5e-57
AT3G43400.1 | chr3:15332136-15333703 FORWARD LENGTH=214 159 2e-39
>AT3G03610.1 | chr3:869479-871687 FORWARD LENGTH=324
Length = 323
Score = 317 bits (812), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 157/323 (48%), Positives = 217/323 (67%), Gaps = 3/323 (0%)
Query: 1 MASKAIKRKPYTADID-RSEKQMETIIPDSVREPLLGNR-THESKSERHEPNMQPNLWDG 58
MAS ++R+ + D+D R ++ + +++ EPLLG+ T S++E E ++W+
Sbjct: 1 MASATLRRRLHHGDVDGRKYERYDATDSETLSEPLLGSSSTDNSRNEYIEERTLEDIWEE 60
Query: 59 -KGQERLGWMHIISTFIAQSVRKIGNALSQFGPLLAKFFSRSCASHGSHDEQAVLLDLSP 117
+ ++++ W I S IAQ + I + G L+ +F S + + LS
Sbjct: 61 ERKRQQVHWTLIFSQLIAQWAQWIAKIVFGSGSLVGRFLSLPTFGQIGTGGRLLPPPLSM 120
Query: 118 XXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPA 177
+PFD S ++HQDAL++LWRLAYP R+LPPLKS+LWKEMGWQ +DP+
Sbjct: 121 LQEERLRNIKRRIEIPFDGSRMEHQDALRQLWRLAYPQRELPPLKSELWKEMGWQGTDPS 180
Query: 178 TDFRAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDL 237
TDFR GG++SLENLI+FA+ YP+SF LLHK DG R+EWEYPFAVAG+NIS+ML QMLDL
Sbjct: 181 TDFRGGGYISLENLIFFAKTYPESFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDL 240
Query: 238 QSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQL 297
QSGK T +F+ L EDEMAFDNL+C+AFQM+DAQWL R+ASYMEFN+VLKS R QL
Sbjct: 241 QSGKPSTIAGIRFLGFLEEDEMAFDNLYCIAFQMMDAQWLARRASYMEFNDVLKSTRAQL 300
Query: 298 EQELTIGSISCVQEMPSFRLLKR 320
E+EL + +S + ++P+F LL +
Sbjct: 301 ERELALDDVSSITDLPAFNLLYK 323
>AT3G60260.1 | chr3:22274303-22276839 FORWARD LENGTH=267
Length = 266
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/208 (52%), Positives = 151/208 (72%)
Query: 113 LDLSPXXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQ 172
DL+P +V +DSS +HQ+ALK+LW+LA+P +L + SD WKEMGWQ
Sbjct: 59 FDLTPAQEECLQRLQSRIDVAYDSSIPQHQEALKDLWKLAFPEEELHGIVSDQWKEMGWQ 118
Query: 173 NSDPATDFRAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLV 232
DP+TDFR GGF+SLENL+YFAR +P SFH LL K G RS WEYPFAVAG+NI++ML+
Sbjct: 119 GKDPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFMLI 178
Query: 233 QMLDLQSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKS 292
QMLDL++ K + V F++ L +E AFD L+C+AF+++D QWL+ +ASYMEFN V+KS
Sbjct: 179 QMLDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMKS 238
Query: 293 MRIQLEQELTIGSISCVQEMPSFRLLKR 320
R QLE+E+ I I+ ++++PS+ LL +
Sbjct: 239 TRRQLEREIMIEDITSLEDLPSYSLLSQ 266
>AT2G44770.1 | chr2:18457817-18459886 FORWARD LENGTH=267
Length = 266
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 157/229 (68%), Gaps = 1/229 (0%)
Query: 92 LAKFFSRSCASHGSHDEQAVLLDLSPXXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRL 151
L + S CA D + DL+P +V +DS+ HQ+AL+ELW+L
Sbjct: 39 LGRGLSCVCAQRRDSDANSTF-DLTPAQEECLQSLQNRIDVAYDSTIPLHQEALRELWKL 97
Query: 152 AYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSLENLIYFARNYPDSFHSLLHKADG 211
++P +L L S+ WKEMGWQ DP+TDFR GGF+SLENL+YFARN+ SF LL K G
Sbjct: 98 SFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFQKSFQDLLRKQVG 157
Query: 212 KRSEWEYPFAVAGVNISYMLVQMLDLQSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQM 271
RS WEYPFAVAG+N+++ML+QMLDL++ K T V + F++ L E+E AFD L+C+AF++
Sbjct: 158 DRSVWEYPFAVAGINLTFMLIQMLDLEAVKPRTIVGATFLKFLSENESAFDLLYCIAFKL 217
Query: 272 LDAQWLTRQASYMEFNEVLKSMRIQLEQELTIGSISCVQEMPSFRLLKR 320
+D QWL+ +ASYMEFN V+KS R QLE+EL + I ++++PS+ LL +
Sbjct: 218 MDQQWLSMRASYMEFNTVMKSTRRQLERELMLEDIMHLEDLPSYALLNQ 266
>AT1G03620.1 | chr1:904319-906013 REVERSE LENGTH=266
Length = 265
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 150/228 (65%), Gaps = 5/228 (2%)
Query: 92 LAKFFSRSCASHGSHDEQAVLLDLSPXXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRL 151
+ F+RS ++AV LSP VPFD + HQ++LK LW +
Sbjct: 40 IGGLFTRS----NRRQDKAVDYTLSPLQEERLQRLQDRMVVPFDETRPDHQESLKALWNV 95
Query: 152 AYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSLENLIYFARNYPDSFHSLLHKADG 211
A+P+ L L ++ WKEMGWQ +P+TDFR GF++LENL++ AR YP F LL K G
Sbjct: 96 AFPNVHLTGLVTEQWKEMGWQGPNPSTDFRGCGFIALENLLFSARTYPVCFRRLLLKQRG 155
Query: 212 KRSEWEYPFAVAGVNISYMLVQMLDLQSG-KMGTKVSSQFVQLLREDEMAFDNLFCMAFQ 270
R++WEYPFAVAG+NIS+ML+QMLDLQ+ K F++LL EDE AFD L+C+AF
Sbjct: 156 DRAKWEYPFAVAGINISFMLIQMLDLQNNPKPKCLPGMNFLKLLEEDERAFDVLYCIAFA 215
Query: 271 MLDAQWLTRQASYMEFNEVLKSMRIQLEQELTIGSISCVQEMPSFRLL 318
M+DAQWL ASYMEFNEVL++ R QLE+EL++ I +Q++P++ LL
Sbjct: 216 MMDAQWLAMHASYMEFNEVLQATRNQLERELSLDDIHRIQDLPAYNLL 263
>AT1G67400.1 | chr1:25248099-25250664 REVERSE LENGTH=282
Length = 281
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 99/185 (53%), Positives = 135/185 (72%)
Query: 134 FDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSLENLIY 193
+D+S HQDAL+ LW YP +L L SD WK MGWQ DP+TDFR GF+SLENL++
Sbjct: 96 YDASRPDHQDALRALWSATYPDEKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLF 155
Query: 194 FARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDLQSGKMGTKVSSQFVQL 253
FA+ + SF LL+K GKR+ WEYPFAVAGVNI++M++QMLDL++ K + + F+Q+
Sbjct: 156 FAKTFSTSFQRLLNKQGGKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQM 215
Query: 254 LREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQLEQELTIGSISCVQEMP 313
L E E AFD L+C+AF ++D QWL + A+YMEFN+VL+ R QLE+EL + + +++MP
Sbjct: 216 LSESEWAFDLLYCVAFVVMDKQWLDKNATYMEFNDVLRCTRGQLERELMMDDVFRIEDMP 275
Query: 314 SFRLL 318
SF LL
Sbjct: 276 SFSLL 280
>AT3G43400.1 | chr3:15332136-15333703 FORWARD LENGTH=214
Length = 213
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 103/149 (69%), Gaps = 10/149 (6%)
Query: 149 WRL------AYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSLENLIYFARNYPDSF 202
WR+ Y +L L SD WK MGWQ DP+TDFR GF+SLENL +FA+ +F
Sbjct: 63 WRIKKSLTSTYADEKLQDLISDQWKNMGWQRKDPSTDFRGDGFISLENLRFFAK----TF 118
Query: 203 HSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDLQSGKMGTKVSSQFVQLLREDEMAFD 262
LL K GKR+ WEYPFAVAGVNI++M++QMLDL++ K + + F+Q+L E E AF
Sbjct: 119 SRLLKKQGGKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFG 178
Query: 263 NLFCMAFQMLDAQWLTRQASYMEFNEVLK 291
L+C+AF ++D QWL + A+YMEFN+VL+
Sbjct: 179 LLYCVAFVVMDKQWLDKNATYMEFNDVLR 207
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,638,245
Number of extensions: 252698
Number of successful extensions: 516
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 6
Length of query: 320
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,392,385
Effective search space: 1854717085
Effective search space used: 1854717085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)