BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0125300 Os12g0125300|AK102502
(622 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05510.1 | chr5:1630651-1632568 REVERSE LENGTH=472 259 4e-69
AT2G33560.2 | chr2:14213810-14215918 REVERSE LENGTH=397 103 2e-22
AT2G20635.1 | chr2:8900410-8903384 FORWARD LENGTH=526 76 7e-14
>AT5G05510.1 | chr5:1630651-1632568 REVERSE LENGTH=472
Length = 471
Score = 259 bits (661), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 205/344 (59%), Gaps = 58/344 (16%)
Query: 18 KDLLSAVVGDIRSYSGSDPLRPWLRGMRKMEAALPPATLRAKLPRFLQKCAQEFQDDARY 77
++LL++++ DI+SYSG D L PW+RG++KM+ +LP L KLPRFLQKCA+ F+ D RY
Sbjct: 9 ENLLASLIVDIKSYSGKDHLLPWIRGVKKMKESLPSQILNEKLPRFLQKCAESFESDKRY 68
Query: 78 RDDSRYLRVWIQLMDYVKDAKPLLKKMEKNRIGLKRSAFYMAYAVYYEKHKRFEDAENMY 137
++DSRY+RVW+QLMD+V D + LL+ ME IG KRS FY AYA++YEK KRFEDAE MY
Sbjct: 69 KNDSRYIRVWLQLMDFVDDPRALLRTMEAKSIGTKRSLFYQAYALHYEKMKRFEDAEKMY 128
Query: 138 RLGTQNLAEPVGELQKAHEQFIRRVELYKRRKSRVQQERMPNKVQSIAISKNEVEGQSRS 197
RLG QNLAEP+ ELQK++ QF+ R+E +K++K++ Q++++ K + R
Sbjct: 129 RLGVQNLAEPMDELQKSYLQFVTRMERHKKKKTQRQEQKLSGKHHKV---------DERQ 179
Query: 198 CTKPKSNPVQRSGSGSNPHLGFPHPLGRPLSRGTSGETMSLSRHNSDDTVVVRFVGSALV 257
+P N V ++ G
Sbjct: 180 QHEPVLNFVDKAIVG--------------------------------------------- 194
Query: 258 GKSETEDACHHGLVEPTINTKEAMDAISSMFLEPLEPETKLKRRSNRDKPSFNQEA-SAF 316
K E E+ACHHGLV+PTIN KEAM+ I++MF EP+E +R R + NQ ++F
Sbjct: 195 -KPEAENACHHGLVDPTINMKEAMNTINNMFKEPIETAPLQRRSRQRSQNKENQGCNNSF 253
Query: 317 EIFVDEDEPNKSGPSKLQDKNMKQDNPKLSQQASAFEIFVDEDD 360
E+F+DE+ ++G S + Q + +Q+ +FEIF+D+++
Sbjct: 254 EVFLDENLECETGTSGKAKTSTTQCGSQPNQE--SFEIFIDDEN 295
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 135/269 (50%), Gaps = 43/269 (15%)
Query: 366 QNMVQHRHFNKENTQVNQNASGFEIFVDENEAHGNGRNAMSHKSSG-CPPKPSRDSKQQA 424
Q + R NKEN N + FE+F+DEN G + + S+ C +P+++S
Sbjct: 234 QRRSRQRSQNKENQGCN---NSFEVFLDENLECETGTSGKAKTSTTQCGSQPNQES---- 286
Query: 425 NFDFQKPFVGGFAILPDDE--DEQLEKNDNGVKINSGTVQLTDDKDTSLCSRQTDSKIRC 482
F I DDE DE ++ND K V L + S + D
Sbjct: 287 -----------FEIFIDDENTDETADENDEAGK---AFVFLLPRDHSPESSEEADRNT-- 330
Query: 483 DDLRPAISGLREDTVFHRFVGSAVVGEPK-VENACHHGLVEPTVNLKEAMDDINNMFGIP 541
P + REDTV RFVGS + EP+ VENACHHGLV+PTVNLKEAM+DINNMFG P
Sbjct: 331 ----PPRARFREDTVVRRFVGSTISDEPEAVENACHHGLVDPTVNLKEAMEDINNMFGEP 386
Query: 542 LNFKGDKPKNKKTTALSERKAALLSGFSIL--------ADDEPGENPAAQVKPSNASKFE 593
+NF K A+ E K +GFSIL + G++ Q PS + + E
Sbjct: 387 INFVRPNRSKNKGKAVVETKPNPAAGFSILEDDDEEEAEQEHQGKSQPTQRLPSKSDERE 446
Query: 594 CQSGLFEPTITTRDVMAEINDMFGMPLDF 622
LFEPT+ T+ + EIN +F MP+DF
Sbjct: 447 ----LFEPTVCTKVALDEINKLFAMPMDF 471
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 36/42 (85%)
Query: 501 FVGSAVVGEPKVENACHHGLVEPTVNLKEAMDDINNMFGIPL 542
FV A+VG+P+ ENACHHGLV+PT+N+KEAM+ INNMF P+
Sbjct: 187 FVDKAIVGKPEAENACHHGLVDPTINMKEAMNTINNMFKEPI 228
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 244 DDTVVVRFVGSALVGKSE-TEDACHHGLVEPTINTKEAMDAISSMFLEPL 292
+DTVV RFVGS + + E E+ACHHGLV+PT+N KEAM+ I++MF EP+
Sbjct: 338 EDTVVRRFVGSTISDEPEAVENACHHGLVDPTVNLKEAMEDINNMFGEPI 387
>AT2G33560.2 | chr2:14213810-14215918 REVERSE LENGTH=397
Length = 396
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 15 DKEKDLLSAVVGDIRSYSGSDPLRPWLRGMRKMEAALPPATLRAKLPRFLQKCAQEFQDD 74
+K ++L+ A I Y G DPL PW+ ++ ++ A PP + L ++C ++F
Sbjct: 64 EKRRNLIEA----IDEYEGDDPLSPWIECIKWVQEAFPPGGECSGLLVIYEQCVRKFWHS 119
Query: 75 ARYRDDSRYLRVWIQLMDYVKDAKPLLKKMEKNRIGLKRSAFYMAYAVYYEKHKRFEDAE 134
RY+DD RYL+VW++ ++ DA+ + K +E N IG + +Y+AYA++ E + + A
Sbjct: 120 ERYKDDLRYLKVWLEYAEHCADAEVIYKFLEVNEIGKTHAVYYIAYALHIEFKNKVKTAN 179
Query: 135 NMYRLGTQNLAEPVGELQKAHEQFIRRVELYKRRKSRVQQERMP 178
++ LG A+PV +L A+++F+ R R+S E+ P
Sbjct: 180 EIFNLGISRDAKPVEKLNDAYKKFMVRT----MRRSNTADEQEP 219
>AT2G20635.1 | chr2:8900410-8903384 FORWARD LENGTH=526
Length = 525
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 32 SGSDPLRPWLRGMR-KMEAALPPATLRAKLPRFLQKCAQEFQDDARYRDDSRYLRVWIQL 90
+ DPL PWL ++ ME L + L C ++ D+RYR+D R+L++W
Sbjct: 8 AAGDPLFPWLMEIKNSMEDLYAGKNSGYDLDKLLFDCISTYKKDSRYRNDLRFLKIWFLY 67
Query: 91 MDYVKDAKPLLKKMEKNRIGLKRSAFYMAYAVYYEKHKRFEDAENMYRLGTQNLAEPVGE 150
++ +D + + +++E+ I S Y YA++ E + A ++Y+ G AEP
Sbjct: 68 LEGREDFERVYREIEETEICKGHSLLYEWYAIFLEVKGLWRRANSVYQTGLSRKAEPFDR 127
Query: 151 LQKAHEQFIRRVELYKRRKS 170
L++AH F++R+ KR K+
Sbjct: 128 LKEAHSLFLQRIS--KRTKA 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,221,786
Number of extensions: 646676
Number of successful extensions: 1534
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 7
Length of query: 622
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 517
Effective length of database: 8,227,889
Effective search space: 4253818613
Effective search space used: 4253818613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)