BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0124500 Os12g0124500|Os12g0124500
(105 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101 71 1e-13
AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103 63 3e-11
AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311 61 1e-10
AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89 60 2e-10
AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263 60 3e-10
AT4G24660.1 | chr4:12724851-12725513 REVERSE LENGTH=221 59 4e-10
AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250 59 5e-10
AT1G14440.1 | chr1:4939076-4940014 REVERSE LENGTH=313 57 2e-09
AT3G28920.1 | chr3:10940598-10941536 REVERSE LENGTH=313 54 2e-08
AT1G75240.1 | chr1:28241576-28242505 FORWARD LENGTH=310 53 4e-08
AT5G15210.1 | chr5:4937874-4938689 REVERSE LENGTH=272 52 8e-08
AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243 50 2e-07
AT5G65410.1 | chr5:26136179-26137018 FORWARD LENGTH=280 50 2e-07
AT5G39760.1 | chr5:15911543-15912547 FORWARD LENGTH=335 47 2e-06
AT5G60480.1 | chr5:24323594-24324169 FORWARD LENGTH=192 47 2e-06
>AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101
Length = 100
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 31 KVVRYRECQRNHAASIGGHAVDGCREFMASX-XXXXXXXXXXXXXXXHQSFHRREVEAAA 89
+ VRY ECQ+NHAA++GG+AVDGCREFMAS H+SFHRRE+E
Sbjct: 29 RTVRYGECQKNHAAAVGGYAVDGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETEV 88
Query: 90 AECDCSSDTSSG 101
CDC+S S+G
Sbjct: 89 V-CDCNSPPSTG 99
>AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103
Length = 102
Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 33 VRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREVE 86
VRY ECQ+NHAA+IGG+AVDGCREFMA+ H++FHR+EV+
Sbjct: 37 VRYVECQKNHAANIGGYAVDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVD 90
>AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311
Length = 310
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 26 RKENNKVVRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREV 85
+KE V++Y+EC +NHAA++GG+A+DGC EFM S H++FHRRE
Sbjct: 78 KKEKPVVIKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNCHRNFHRRET 137
Query: 86 E 86
E
Sbjct: 138 E 138
>AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89
Length = 88
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 33 VRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREVE 86
VRY ECQ+NHAA+IGG+AVDGCREFMAS H++FHRREV+
Sbjct: 24 VRYVECQKNHAANIGGYAVDGCREFMAS---GGDDALTCAACGCHRNFHRREVD 74
>AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263
Length = 262
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 34 RYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREVE 86
RYRECQ+NHAAS GGH VDGC EFM+S H+SFHR+E++
Sbjct: 81 RYRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAACDCHRSFHRKEID 133
>AT4G24660.1 | chr4:12724851-12725513 REVERSE LENGTH=221
Length = 220
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 33 VRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREVEA 87
+RYREC +NHA +IGGHAVDGC EFM S H++FHR+E E+
Sbjct: 47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES 101
>AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250
Length = 249
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 32/52 (61%)
Query: 34 RYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREV 85
+YRECQ+NHAAS GGH VDGC EFMA H+SFHR+EV
Sbjct: 59 KYRECQKNHAASTGGHVVDGCCEFMAGGEEGTLGALKCAACNCHRSFHRKEV 110
>AT1G14440.1 | chr1:4939076-4940014 REVERSE LENGTH=313
Length = 312
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 32 VVRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREVEAAAA 90
+++Y+EC +NHAA++GG+A DGC EFM S H++FHR+EVE A
Sbjct: 87 MIKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEVEGELA 145
>AT3G28920.1 | chr3:10940598-10941536 REVERSE LENGTH=313
Length = 312
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 33 VRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXX--XHQSFHRREVEAAAA 90
V Y+EC +NHAA+IGGHA+DGC EFM S H++FHRRE + ++A
Sbjct: 50 VTYKECLKNHAAAIGGHALDGCGEFMPSPSSTPSDPTSLKCAACGCHRNFHRRETDDSSA 109
Query: 91 ECDCSSDTSSGT 102
S SS T
Sbjct: 110 VPPPSLLPSSTT 121
>AT1G75240.1 | chr1:28241576-28242505 FORWARD LENGTH=310
Length = 309
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 32 VVRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREVEAAAA 90
VRYREC +NHAAS+GG DGC EFM S H++FHR+E++ +
Sbjct: 73 TVRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRNFHRKEMDGVGS 131
>AT5G15210.1 | chr5:4937874-4938689 REVERSE LENGTH=272
Length = 271
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 32 VVRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXX--XHQSFHRRE 84
V Y+EC +NHAA IGGHA+DGC EFM S H++FHRRE
Sbjct: 53 VATYKECLKNHAAGIGGHALDGCGEFMPSPSFNSNDPASLTCAACGCHRNFHRRE 107
>AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243
Length = 242
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 33 VRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXX--XHQSFHRRE 84
V Y+EC +NHAA++GGHA+DGC EFM S H++FHRR+
Sbjct: 29 VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRD 82
>AT5G65410.1 | chr5:26136179-26137018 FORWARD LENGTH=280
Length = 279
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 33 VRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXXXHQSFHRREV 85
R+REC +N A +IGGHAVDGC EFM + H++FHR+E+
Sbjct: 73 FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125
>AT5G39760.1 | chr5:15911543-15912547 FORWARD LENGTH=335
Length = 334
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 32 VVRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXX--XHQSFHRRE 84
+ Y+EC +NHAA++GGHA+DGC EFM S H++FHRR+
Sbjct: 53 LFTYKECLKNHAAALGGHALDGCGEFMPSPSSISSDPTSLKCAACGCHRNFHRRD 107
>AT5G60480.1 | chr5:24323594-24324169 FORWARD LENGTH=192
Length = 191
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 32 VVRYRECQRNHAASIGGHAVDGCREFMASXXXXXXXXXXXXXXX--XHQSFHRR 83
VV Y EC +NHA S+GGHA+DGC EF H++FHRR
Sbjct: 2 VVLYNECLKNHAVSLGGHALDGCGEFTPKSTTILTDPPSLRCDACGCHRNFHRR 55
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.125 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,737,697
Number of extensions: 39429
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 16
Length of query: 105
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 30
Effective length of database: 9,050,369
Effective search space: 271511070
Effective search space used: 271511070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)