BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0123100 Os12g0123100|AK070039
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04590.2  | chr1:1258760-1261411 REVERSE LENGTH=385            209   1e-54
AT4G21190.1  | chr4:11292493-11293763 REVERSE LENGTH=308          124   9e-29
AT4G18975.1  | chr4:10392170-10393665 REVERSE LENGTH=288          121   5e-28

>AT1G04590.2 | chr1:1258760-1261411 REVERSE LENGTH=385
          Length = 384

 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 125/166 (75%), Gaps = 3/166 (1%)

Query: 88  VGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQEFPVASLKQALVALEKEEQW 147
           +G+N+   +K KFLVNTLLD+ED+KE VY  LDAWVA+E+ FP+ASLK  + +LEKE QW
Sbjct: 136 IGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQW 195

Query: 148 HRIVQVIKWMLSKGQGKTIRTYEQLVCALEKDNRADEACRIWELKIAHDLQSVPWRFCRL 207
           HR+VQVIKW+LSKGQG T+ TY QL+ AL+ D RA+EA  IW  K+ +DL SVPW+ C  
Sbjct: 196 HRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQ 255

Query: 208 MLGIYYRNNRLDTLV---KLFKNLEACGRKPPSKDIVRKVEDTYEM 250
           M+ IY+RNN L  LV   KLFK+LE+  RKPP K IV+ V D YE+
Sbjct: 256 MMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYEL 301



>AT4G21190.1 | chr4:11292493-11293763 REVERSE LENGTH=308
          Length = 307

 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 91/146 (62%)

Query: 90  KNLSSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQEFPVASLKQALVALEKEEQWHR 149
           K + +  K   ++  +  L + KE VY  LD+++A+E EFP+  +K+ALV LE E++W +
Sbjct: 50  KRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKK 109

Query: 150 IVQVIKWMLSKGQGKTIRTYEQLVCALEKDNRADEACRIWELKIAHDLQSVPWRFCRLML 209
           I+QV KWMLSKGQG+T+ TY  L+ AL +DNR DEA  +W       L+  P +F   M+
Sbjct: 110 IIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMI 169

Query: 210 GIYYRNNRLDTLVKLFKNLEACGRKP 235
            IYY+ +    L ++F ++E  G KP
Sbjct: 170 SIYYKRDMHQKLFEVFADMEELGVKP 195



>AT4G18975.1 | chr4:10392170-10393665 REVERSE LENGTH=288
          Length = 287

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 93  SSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQEFPVASLKQALVALEKEEQWHRIVQ 152
            S +K   LV  L  L + KE VY  L+ WVA+E EFP+ +  +AL  L K  QWHR++Q
Sbjct: 93  GSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQ 152

Query: 153 VIKWMLSKGQGKTIRTYEQLVCALEKDNRADEACRIWELKIAHDLQSVPWRFCRLMLGIY 212
           + KWMLSKGQG T+ TY+ L+ A + D RADEA  +W + +    +S+P R    M+ +Y
Sbjct: 153 LAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALY 212

Query: 213 YRNNRLDTLVKLFKNLEACGRKPPSKDIVRKVEDTY 248
             ++  D ++++F ++E   +  P +D  R+V   +
Sbjct: 213 AHHDLHDKVIEVFADMEEL-KVSPDEDSARRVARAF 247



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,924,886
Number of extensions: 235395
Number of successful extensions: 929
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 936
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)