BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0121300 Os12g0121300|AK068868
(424 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38670.1 | chr2:16168979-16171680 FORWARD LENGTH=422 648 0.0
AT2G32260.1 | chr2:13697645-13700241 FORWARD LENGTH=333 106 3e-23
AT4G15130.1 | chr4:8637793-8639388 FORWARD LENGTH=305 105 4e-23
>AT2G38670.1 | chr2:16168979-16171680 FORWARD LENGTH=422
Length = 421
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/415 (74%), Positives = 350/415 (84%), Gaps = 1/415 (0%)
Query: 11 KLVAACVIGGIVLGASVVALHLAGPVAIPALPPVDALXXXXXXXXXXXXXVYMDGCFDMM 70
K+V +C++GG LHL +P + VYMDGCFDMM
Sbjct: 7 KIVGSCIVGGAAFAVGASFLHLFLKGELPLGLGLGLSCPWRILRKRKPVRVYMDGCFDMM 66
Query: 71 HYGHCNALRQAHALGDELIVGVVSDDEITANKGPPVTPLHERLIMVRAVKWVHDVIPDAP 130
HYGHCNALRQA ALGD+L+VGVVSD+EI ANKGPPVTPLHER+ MV+AVKWV +VI DAP
Sbjct: 67 HYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKAVKWVDEVISDAP 126
Query: 131 YAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSTTDIV 190
YAITEDFM KLF+EY IDYIIHGDDPC+LPDGTDAYALAKK GRYKQIKRTEGVS+TDIV
Sbjct: 127 YAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIV 186
Query: 191 GRMLLCVRERSASDSHNHSSLQRQFSHGHGQ-KIDDSGSGSGTRISHFLPTSRRIVQFSN 249
GRMLLCVRERS SD+H+ SSLQRQFSHGH K +D S +GTR+SHFLPTSRRIVQFSN
Sbjct: 187 GRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHFLPTSRRIVQFSN 246
Query: 250 SRGPGPDSRIVYIDGAFDLFHAGHVEILRLARELGDFLLVGIHTDQTISSTRGPHRPIMN 309
+GPGPD+RI+YIDGAFDLFHAGHVEILR ARELGDFLLVGIH DQT+S+ RG HRPIMN
Sbjct: 247 GKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTVSAKRGAHRPIMN 306
Query: 310 LHERSLSVLACRYVDEVIIGAPWDVSKDMITTFNISLVVHGTIAENMDFMKDDLNPYAVP 369
LHERSLSVLACRYVDEVIIGAPW+VS+D ITTF+ISLVVHGT+AE+ DF K++ NPY+VP
Sbjct: 307 LHERSLSVLACRYVDEVIIGAPWEVSRDTITTFDISLVVHGTVAESDDFRKEEDNPYSVP 366
Query: 370 RAMGIYRRLESPLDITTSTIIRRIVANHEAYQKRNEKKEASEKKYYDSKSFVNGE 424
+MGI++ L+SPLDITTSTIIRRIVANHEAYQKRN KKEASEKKYY+ KSFV+G+
Sbjct: 367 ISMGIFQVLDSPLDITTSTIIRRIVANHEAYQKRNAKKEASEKKYYEQKSFVSGD 421
>AT2G32260.1 | chr2:13697645-13700241 FORWARD LENGTH=333
Length = 332
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 61 VYMDGCFDMMHYGHCNALRQAHAL---GDELIVGVVSDDEITANKGPPVTPLHERLIMVR 117
VY DG +D+ H+GH +L QA L+VG +D+ KG V ER +R
Sbjct: 37 VYADGIYDLFHFGHARSLEQAKLAFPNNTYLLVGCCNDETTHKYKGRTVMTAEERYESLR 96
Query: 118 AVKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPDGT--DAYALAKKVGRY 175
KWV +VIPDAP+ + ++F++K + IDY+ H P G D Y KKVGR+
Sbjct: 97 HCKWVDEVIPDAPWVVNQEFLDK----HQIDYVAHDSLPYADSSGAGKDVYEFVKKVGRF 152
Query: 176 KQIKRTEGVSTTDIVGRML 194
K+ +RTEG+ST+DI+ R++
Sbjct: 153 KETQRTEGISTSDIIMRIV 171
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 260 VYIDGAFDLFHAGH---VEILRLARELGDFLLVGIHTDQTISSTRGPHRPIMNLHERSLS 316
VY DG +DLFH GH +E +LA +LLVG D+T +G R +M ER S
Sbjct: 37 VYADGIYDLFHFGHARSLEQAKLAFPNNTYLLVGCCNDETTHKYKG--RTVMTAEERYES 94
Query: 317 VLACRYVDEVIIGAPWDVSKDMITTFNISLVVHGTI--AENMDFMKDDLNPYAVPRAMGI 374
+ C++VDEVI APW V+++ + I V H ++ A++ KD Y + +G
Sbjct: 95 LRHCKWVDEVIPDAPWVVNQEFLDKHQIDYVAHDSLPYADSSGAGKD---VYEFVKKVGR 151
Query: 375 YRRLESPLDITTSTIIRRIVANHEAYQKRN 404
++ + I+TS II RIV ++ Y RN
Sbjct: 152 FKETQRTEGISTSDIIMRIVKDYNQYVMRN 181
>AT4G15130.1 | chr4:8637793-8639388 FORWARD LENGTH=305
Length = 304
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 61 VYMDGCFDMMHYGHCNALRQAHAL--GDELIVGVVSDDEITANKGPPVTPLHERLIMVRA 118
VY DG FD+ H+GH A+ QA L+VG +D+ KG V ER +R
Sbjct: 23 VYADGIFDLFHFGHARAIEQAKKSFPNTYLLVGCCNDEITNKFKGKTVMTESERYESLRH 82
Query: 119 VKWVHDVIPDAPYAITEDFMNKLFNEYNIDYIIHGDDPCLLPD--GTDAYALAKKVGRYK 176
KWV +VIPDAP+ +T +F++K + IDY+ H P G D Y K +G++K
Sbjct: 83 CKWVDEVIPDAPWVLTTEFLDK----HKIDYVAHDALPYADTSGAGNDVYEFVKSIGKFK 138
Query: 177 QIKRTEGVSTTDIVGRML 194
+ KRTEG+ST+DI+ R++
Sbjct: 139 ETKRTEGISTSDIIMRIV 156
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 260 VYIDGAFDLFHAGHVEILRLAREL--GDFLLVGIHTDQTISSTRGPHRPIMNLHERSLSV 317
VY DG FDLFH GH + A++ +LLVG D+ + +G + +M ER S+
Sbjct: 23 VYADGIFDLFHFGHARAIEQAKKSFPNTYLLVGCCNDEITNKFKG--KTVMTESERYESL 80
Query: 318 LACRYVDEVIIGAPWDVSKDMITTFNISLVVHGTIAENMDFMKDDLNPYAVPRAMGIYRR 377
C++VDEVI APW ++ + + I V H + D + Y +++G ++
Sbjct: 81 RHCKWVDEVIPDAPWVLTTEFLDKHKIDYVAHDALP-YADTSGAGNDVYEFVKSIGKFKE 139
Query: 378 LESPLDITTSTIIRRIVANHEAYQKRN 404
+ I+TS II RIV ++ Y RN
Sbjct: 140 TKRTEGISTSDIIMRIVKDYNQYVLRN 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,149,248
Number of extensions: 383497
Number of successful extensions: 912
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 5
Length of query: 424
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 323
Effective length of database: 8,337,553
Effective search space: 2693029619
Effective search space used: 2693029619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)