BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0121000 Os12g0121000|AK068049
         (128 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65295.1  | chr1:24251567-24252054 FORWARD LENGTH=116           50   4e-07
AT5G01015.1  | chr5:5335-5769 REVERSE LENGTH=105                   45   7e-06

>AT1G65295.1 | chr1:24251567-24252054 FORWARD LENGTH=116
          Length = 115

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 92  CCYAIDCNIPGKPFGVCAFSPHTCDC 117
           CCYAI+CNIP +PFG C+F+P TC+C
Sbjct: 85  CCYAINCNIPNRPFGYCSFTPKTCNC 110



>AT5G01015.1 | chr5:5335-5769 REVERSE LENGTH=105
          Length = 104

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 10  SLTGLAMVVLLIFSSSFLQAAQGSDKKMAMKYDVPVKRLVYRPSAMQAAVIGTEAAAYEP 69
           S+  L ++  ++ +++      G + +     +V ++  V+R   M             P
Sbjct: 7   SVIFLGLLATILVTTNGQGDGTGLNAEEMWPVEVGMEYRVWRRKLMT------------P 54

Query: 70  FELCMGXXXXXXXXXXXXVDTRCCYAIDCNIPGKPFGVCAFSPHTCDCGA 119
            ELC+                 CC+ I+C +P KPFGVCAF P +C C +
Sbjct: 55  LELCL---ECKCCSSTTCATMPCCFGINCQLPNKPFGVCAFVPKSCHCNS 101



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,280,223
Number of extensions: 66248
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 41
Effective length of database: 8,721,377
Effective search space: 357576457
Effective search space used: 357576457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)