BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0115500 Os12g0115500|J023050M03
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 82 5e-17
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 75 6e-15
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 71 1e-13
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 71 1e-13
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 71 1e-13
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 70 3e-13
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 67 2e-12
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 64 2e-11
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 56 4e-09
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 54 2e-08
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 47 2e-06
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 29 CCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTD 88
CC GVK LN+ A+TT DRQ ACRC++S A SI LN +G+PGKCGV++ +PIS+ST+
Sbjct: 51 CCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTN 110
Query: 89 CNKV 92
CN +
Sbjct: 111 CNNI 114
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 75.1 bits (183), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 25 LTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSI-KSLNLGTVAGVPGKCGVNVGFPI 83
LTQGCCNGV L N A TT DRQ ACRCL+S A ++ LN AG+P C VN+ + I
Sbjct: 49 LTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKI 108
Query: 84 SLSTDCNKV 92
S ST+CN V
Sbjct: 109 SASTNCNTV 117
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 25 LTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS-LNLGTVAGVPGKCGVNVGFPI 83
+ +GCC+GV+ LN+ ARTT DRQ ACRC++ A ++ S LN G A +PG C V + +PI
Sbjct: 49 IPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPI 108
Query: 84 SLSTDCNKV 92
S T+CN V
Sbjct: 109 SARTNCNTV 117
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 11 TIKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAG 70
T+ + + L CC GVK L A+TT DR+ C CLK IK LN VA
Sbjct: 34 TLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAA 93
Query: 71 VPGKCGVNVGFPISLSTDCNKVS 93
+P CGV++ +PIS ST+C+ +S
Sbjct: 94 LPTTCGVSIPYPISFSTNCDSIS 116
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 29 CCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTD 88
CC GVK LN A+TT DRQ ACRCL+S A K +N +G+PGKCGV++ +PIS ST+
Sbjct: 51 CCAGVKKLNGMAQTTPDRQQACRCLQSAA---KGVNPSLASGLPGKCGVSIPYPISTSTN 107
Query: 89 CNKV 92
C +
Sbjct: 108 CATI 111
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 29 CCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTD 88
CCNG+ L AA ADRQ AC CLKS+A +I +N +P KCGVN+G P S + D
Sbjct: 55 CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVD 114
Query: 89 CNKVS 93
CN ++
Sbjct: 115 CNSIN 119
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 25 LTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS-LNLGTVAGVPGKCGVNVGFPI 83
+ CC+GVK LN+ A+TT DRQ AC C++ A ++ S LN G AG+P CGVN+ + I
Sbjct: 49 IPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKI 108
Query: 84 SLSTDCNKV 92
S ST+C V
Sbjct: 109 STSTNCKTV 117
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 24 GLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAG--SIKSLNLGTVAGVPGKCGVNVGF 81
+ CCNG++ L+ A + +D+Q CRC+KS+ G S S+ L A +PGKCGV + +
Sbjct: 45 AIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPY 104
Query: 82 PISLSTDCNKV 92
I ST+CN +
Sbjct: 105 KIDPSTNCNSI 115
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 23 SGLTQG------CCNGVKGLNNAARTTADRQAACRCLKSLAG--SIKSLNLGTVAGVPGK 74
S +TQG CCNG+ L + A+T+ DRQ CRC+KS G ++ + +P K
Sbjct: 35 SYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSK 94
Query: 75 CGVNVGFPISLSTDCN 90
CGV++ + S STDC+
Sbjct: 95 CGVDLPYKFSPSTDCD 110
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 29 CCNGVKGLNNAARTTADRQAACRCLKSLAGSI-KSLNLGTVAGVPGKCGVNVGFP--ISL 85
CCNGV+ LN TT DR+ ACRC+K+ A ++ LN AG+P +CG+ + + I
Sbjct: 55 CCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRF 114
Query: 86 STDCN 90
+T CN
Sbjct: 115 NTKCN 119
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 27 QGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLS 86
+ CC+GVK L A T+AD++AAC+C+KS+A S+ ++ + CG ++ S +
Sbjct: 51 ETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPT 109
Query: 87 TDCNKV 92
DC V
Sbjct: 110 VDCTTV 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,785,267
Number of extensions: 52215
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 11
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)