BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0115300 Os12g0115300|AK059737
(118 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 97 1e-21
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 92 6e-20
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 89 6e-19
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 86 3e-18
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 84 1e-17
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 83 3e-17
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 82 4e-17
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 78 1e-15
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 73 3e-14
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 69 6e-13
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 62 5e-11
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 66/90 (73%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
I+CG V ++APC +Y++ G + CC GVK LN+ A+TT DRQ ACRC+++ A +I
Sbjct: 25 ISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISG 84
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN A+G+PGKCGV++ +PIS+ST+C+ +
Sbjct: 85 LNPSLASGLPGKCGVSIPYPISMSTNCNNI 114
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
ITCG V S+++PC+ Y++ G + CC GVK LN A+TT DRQ ACRCL++ A K
Sbjct: 25 ITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA---KG 81
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
+N A+G+PGKCGV++ +PIS ST+C+ +
Sbjct: 82 VNPSLASGLPGKCGVSIPYPISTSTNCATI 111
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 88.6 bits (218), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
I CG V S +A C++Y+T G L CC GVK L A+TT DR+ C CLK IK
Sbjct: 26 IQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKG 85
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
LN A +P CGV++ +PIS ST+C +S
Sbjct: 86 LNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTI-K 86
++CG V +A CI+Y+T LTQGCCNGV L N A TT DRQ ACRCL++ A +
Sbjct: 27 MSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGP 86
Query: 87 SLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN AAG+P C VN+ + IS ST+C+ V
Sbjct: 87 GLNTARAAGLPSACKVNIPYKISASTNCNTV 117
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
I C QV +A C+ Y+ G + CCNG+ L AA ADRQ AC CLK++A TI
Sbjct: 29 IACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPG 88
Query: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
+N A +P KCGVN+G P S + DC+ ++
Sbjct: 89 INDDFAKQLPAKCGVNIGVPFSKTVDCNSIN 119
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
++CG V S +A CI YV G + CC+GVK LN+ A+TT DRQ AC C++ A + S
Sbjct: 27 LSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS 86
Query: 88 -LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN G AAGIP CGVN+ + IS ST+C V
Sbjct: 87 GLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
I+CG V ++ C +Y+T G + +GCC+GV+ LN+ ARTT DRQ ACRC++ A + S
Sbjct: 27 ISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS 86
Query: 88 -LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN G AA +PG C V + +PIS T+C+ V
Sbjct: 87 RLNAGRAARLPGACRVRISYPISARTNCNTV 117
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTI-- 85
I+C V + + PC+ YV G + CCNG++ L+ A + +D+Q CRC+K++ G +
Sbjct: 24 ISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSY 83
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
S+ L AA +PGKCGV + + I ST+C+ +
Sbjct: 84 SSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAG--TI 85
++C V + + PC+SYVT G + CCNG+ L + A+T+ DRQ CRC+K+ G T+
Sbjct: 21 VSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTL 80
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCS 115
+ A +P KCGV++ + S STDC
Sbjct: 81 SPRTIQNALELPSKCGVDLPYKFSPSTDCD 110
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 28 ITCGQVGSAIAPCISYVTGRGGLTQG--CCNGVKGLNNAARTTADRQAACRCLKTLAGTI 85
++CG+V S + PC Y+T G + G CCNGV+ LN TT DR+ ACRC+K A +
Sbjct: 27 LSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNV 86
Query: 86 -KSLNLGAAAGIPGKCGVNVGF--PISLSTDCS 115
LN AAGIP +CG+ + + I +T C+
Sbjct: 87 GPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 28 ITCGQVGSAIAPCISYVT-GRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIK 86
I+C V + PC+SY+T G G + CC+GVK L A T+AD++AAC+C+K++A ++
Sbjct: 26 ISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV- 84
Query: 87 SLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
++ A + CG ++ S + DC+ V
Sbjct: 85 TVKPELAQALASNCGASLPVDASPTVDCTTV 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,822,974
Number of extensions: 52660
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 11
Length of query: 118
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 33
Effective length of database: 8,776,209
Effective search space: 289614897
Effective search space used: 289614897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)