BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0112800 Os12g0112800|J065105B10
         (92 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58375.1  | chr5:23596369-23596705 FORWARD LENGTH=86            82   5e-17
AT5G18150.1  | chr5:6000014-6000331 REVERSE LENGTH=77              61   1e-10
AT5G14602.1  | chr5:4709436-4709678 FORWARD LENGTH=81              57   2e-09

>AT5G58375.1 | chr5:23596369-23596705 FORWARD LENGTH=86
          Length = 85

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 1  MCPLRVILIFLSATIAGFFLIRGLNXXXXXXXXXXXXXXSESPRERAPVPLHSKVGSALK 60
          MCPLR+ILIFLSAT+AGFF+++ LN                +  +   V   SKVG A+K
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDD--SVSGFSKVGMAMK 58

Query: 61 TGFWTMVDMASGKYLWRTLVSPPTK 85
          +GFWT VDMASG+YLW  L S   +
Sbjct: 59 SGFWTCVDMASGRYLWNNLCSNAKR 83



>AT5G18150.1 | chr5:6000014-6000331 REVERSE LENGTH=77
          Length = 76

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 19/83 (22%)

Query: 1  MCPLRVILIFLSATIAGFFLIRGLNXXXXXXXXXXXXXXSESPRERAPVPLHSK----VG 56
          MCP+R +L+F SA +AG+F  + +               S SP   +P  L+ K    + 
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTV---------------SSSPEFDSPDELNEKQELNLK 45

Query: 57 SALKTGFWTMVDMASGKYLWRTL 79
            ++ GFW  VDMASG+YLWR L
Sbjct: 46 KKMENGFWVFVDMASGRYLWRNL 68



>AT5G14602.1 | chr5:4709436-4709678 FORWARD LENGTH=81
          Length = 80

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 1  MCPLRVILIFLSATIAGFFLIRGLNXXXXXXXXXXXXXXSESPRERAPVPLHSKVGSALK 60
          MCPLR +L+F SA +AG+   R +N              +   +E+  +    K    + 
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEA---KEKQGLDFKRK----MD 53

Query: 61 TGFWTMVDMASGKYLWRTL 79
           G WT VDMASG+YLWR L
Sbjct: 54 NGLWTFVDMASGRYLWRNL 72



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,651,130
Number of extensions: 47947
Number of successful extensions: 70
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 11,106,569
Length adjustment: 63
Effective length of query: 29
Effective length of database: 9,379,361
Effective search space: 272001469
Effective search space used: 272001469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)