BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0110100 Os12g0110100|AK067362
(484 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44970.1 | chr2:18548999-18552019 REVERSE LENGTH=504 592 e-169
>AT2G44970.1 | chr2:18548999-18552019 REVERSE LENGTH=504
Length = 503
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 303/471 (64%), Positives = 358/471 (76%), Gaps = 23/471 (4%)
Query: 29 SADRTEDSQLFLSVPALNQAASYLAQTASYLTQCLPVSGYTAISEEGQELATLPPASTVG 88
+ D Q+F S+PALN+AASY+ Q SYL C S Y+ + G++ + P
Sbjct: 37 NGDNAVAPQVFNSLPALNEAASYITQATSYLGSCF--SDYS-VEYGGKDTISHPHELLRS 93
Query: 89 GSSFQASSEQSADSSPGE---------IDNTGSSSQEITEQM--------APLRVFQNGA 131
S +S S SPGE + S S+E TE + R+ NG
Sbjct: 94 TSGVDGNSPVSVCISPGERFSTSSEASTSDANSPSRESTEILPQATNAIVTSNRLNLNGI 153
Query: 132 SLFQGLVERARKTVRGSANDIGWLQQDQSLPPTEDGTARFLEILDAVRKNEHKLPDSMVY 191
S+FQGL+ERAR+TVRGSA+DIGWLQ+ +PP EDGT RF +IL+ + H+LP+++VY
Sbjct: 154 SMFQGLIERARRTVRGSADDIGWLQRAPEMPPVEDGTDRFNKILEDIGHGVHRLPNTVVY 213
Query: 192 LLVPGLFSNHGPLYFVKTKSYFSKMGLACHIAKIHSESSVSKNAREIKEYIEEIYWGSKK 251
LLVPGLFSNHGPLYFV TK+ FSKMGLACHIAKIHSESSV KNAREIKEYIEE+ WGS K
Sbjct: 214 LLVPGLFSNHGPLYFVDTKTKFSKMGLACHIAKIHSESSVEKNAREIKEYIEELCWGSNK 273
Query: 252 RVLLLGHSKGGVDAAAALSLYWPQLKDKVAGLALAQSPYGGSPVASDILREGQLGDYVRL 311
RVLLLGHSKGG+DAAAALSLYWP+LKDKVAGL LAQSPYGGSP+A+DILREGQLGDYV L
Sbjct: 274 RVLLLGHSKGGIDAAAALSLYWPELKDKVAGLVLAQSPYGGSPIATDILREGQLGDYVNL 333
Query: 312 RKLMEILVSKVLKGDLQALEDLTYERRKEFLRQNPLPPEVPIVSFHTEASITPSVLTALS 371
RK+MEIL+SKV+KGD+QALEDLTYERRKEFL+ +PLP E+P VSF TEASI+P+VL+ LS
Sbjct: 334 RKMMEILISKVIKGDIQALEDLTYERRKEFLKNHPLPRELPTVSFRTEASISPAVLSTLS 393
Query: 372 HVAHLELPAAADGNPTRIPVVMPLSAAMAACSQLLVARYGEKSDGLVTRKDAEVPGSVVV 431
HVAH ELP ++PVVMPL AAMAAC+QLL RYGEKSDGLVT DAEVPGSVVV
Sbjct: 394 HVAHAELPLT--NQAAKLPVVMPLGAAMAACAQLLQVRYGEKSDGLVTCCDAEVPGSVVV 451
Query: 432 RPERKLDHAWMVYSSLNEEPRDQADTSQVCEALLTLLVEVAQKRRHEMAMK 482
RP+RKLDHAWMVYSSLNE P +AD +QVCEALLTLLV+V Q+R+ ++A K
Sbjct: 452 RPKRKLDHAWMVYSSLNEVPL-EADAAQVCEALLTLLVQVEQERQQKLATK 501
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,122,077
Number of extensions: 413175
Number of successful extensions: 957
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 382
Effective length of database: 8,310,137
Effective search space: 3174472334
Effective search space used: 3174472334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)