BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0106100 Os12g0106100|Os12g0106100
         (225 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07060.1  | chr1:2167138-2168397 REVERSE LENGTH=234            107   7e-24

>AT1G07060.1 | chr1:2167138-2168397 REVERSE LENGTH=234
          Length = 233

 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 9/171 (5%)

Query: 23  RRFGDQELRLLDAALSAGADVPSLLHTRSSARCLLRKAAAQAFSSV--PDLGTTLSTADF 80
           RRF ++ LR+L+ +L A  +V S L  RS  R  +R  +   F  +    +   LS  +F
Sbjct: 46  RRFDEESLRILELSLVA-MNVKSFLEVRSRLRDFMRSESVVIFGELTGESMVAKLSVLEF 104

Query: 81  FARAFALAGDVESCLAMRYEALLLRQAEYSDDLHLQVSNEEWLTFAKDSLDNGFYTIASK 140
           FARAFAL GD+ESCLAMRYEAL LRQ +    L L VS+ EW  FA  S++NGF +IA K
Sbjct: 105 FARAFALLGDMESCLAMRYEALNLRQLKSPSCLWLGVSHSEWTKFAVQSMENGFPSIAGK 164

Query: 141 AFANALVRIDPN---HPEYLDSTNSILKKDKINDISGLQNLAKSLSALRSG 188
           A  NAL+ +  +    P+  D+++ +   D    +  L++ A SL++  SG
Sbjct: 165 ASENALLSLKKDSLIEPKSEDNSDIL---DAAEKVRRLRDSAASLTSSHSG 212



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,162,465
Number of extensions: 146709
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)