BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0104400 Os12g0104400|AK071185
(385 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05580.1 | chr5:1664331-1666345 FORWARD LENGTH=436 535 e-152
AT3G11170.1 | chr3:3499959-3502126 FORWARD LENGTH=447 517 e-147
AT2G29980.1 | chr2:12781787-12784946 REVERSE LENGTH=387 504 e-143
AT3G12120.1 | chr3:3860592-3861743 REVERSE LENGTH=384 231 5e-61
AT4G30950.1 | chr4:15057278-15059673 REVERSE LENGTH=449 108 4e-24
>AT5G05580.1 | chr5:1664331-1666345 FORWARD LENGTH=436
Length = 435
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/363 (69%), Positives = 285/363 (78%), Gaps = 5/363 (1%)
Query: 14 SEDARLFFDAAKPPPFRIGDVRAAIPAHCWRKTPLRSLSYVARDLLIVXXXXXXXXTRID 73
SE+ FD PPPF + D+RAAIP HCW K P S+SYV RD+ IV +
Sbjct: 74 SEEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNN 133
Query: 74 VSVAWAAWPLYWAAQGTMFWALFVLGHDCGHGSFSDSAMLNNVVGHLLHSFILVPYHGWR 133
W WPLYW AQGTMFWALFVLGHDCGHGSFS+ LN+V GHLLHS ILVPYHGWR
Sbjct: 134 ----WLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWR 189
Query: 134 ISHRTHHQNHGHIEKDESWHPITEKLYRKLETRTKKLRFTLPFPLLAFPVYLWYRSPGKT 193
ISHRTHHQNHGH+E DESWHP+ E +Y+ LE T+ RFTLPFP+LA+P YLW RSPGK
Sbjct: 190 ISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFTLPFPMLAYPFYLWNRSPGKQ 249
Query: 194 GSHFLPSSDLFSPKEKSDVIVSTTCWCIMISLLVALACVFGSVPVLMLYGVPYLVFVMWL 253
GSH+ P SDLF PKEK DV+ ST CW M +LLV L V G + +L LYG+PY +FVMWL
Sbjct: 250 GSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWL 309
Query: 254 DLVTYLHHHGHND-LPWYRGEEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIP 312
D VTYLHHHGH D LPWYRG+EWSYLRGGLTT+DRDYGWINNIHHDIGTHVIHHLFPQIP
Sbjct: 310 DFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIP 369
Query: 313 HYHLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVVYYQTDHS 372
HYHLVEAT+AA+PVLG+YYREP+ SGPLPLHL G L++S++ DHFVSD GDVVYY+ D
Sbjct: 370 HYHLVEATEAAKPVLGKYYREPKNSGPLPLHLLGSLIKSMKQDHFVSDTGDVVYYEADPK 429
Query: 373 LNG 375
LNG
Sbjct: 430 LNG 432
>AT3G11170.1 | chr3:3499959-3502126 FORWARD LENGTH=447
Length = 446
Score = 517 bits (1332), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/363 (67%), Positives = 283/363 (77%), Gaps = 5/363 (1%)
Query: 14 SEDARLFFDAAKPPPFRIGDVRAAIPAHCWRKTPLRSLSYVARDLLIVXXXXXXXXTRID 73
ED + FD PPPF + D+RAAIP HCW K P +SLSYV RD+ IV +
Sbjct: 81 EEDNKQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNN 140
Query: 74 VSVAWAAWPLYWAAQGTMFWALFVLGHDCGHGSFSDSAMLNNVVGHLLHSFILVPYHGWR 133
W WPLYW AQGTMFWALFVLGHDCGHGSFS+ LN+VVGHLLHS ILVPYHGWR
Sbjct: 141 ----WIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWR 196
Query: 134 ISHRTHHQNHGHIEKDESWHPITEKLYRKLETRTKKLRFTLPFPLLAFPVYLWYRSPGKT 193
ISHRTHHQNHGH+E DESWHP++EK+Y L+ T+ RFTLP +LA+P YLW RSPGK
Sbjct: 197 ISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFTLPLVMLAYPFYLWARSPGKK 256
Query: 194 GSHFLPSSDLFSPKEKSDVIVSTTCWCIMISLLVALACVFGSVPVLMLYGVPYLVFVMWL 253
GSH+ P SDLF PKE+ DV+ ST CW M +LLV L G + +L LYG+PY + VMWL
Sbjct: 257 GSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPYWINVMWL 316
Query: 254 DLVTYLHHHGHND-LPWYRGEEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIP 312
D VTYLHHHGH D LPWYRG+EWSYLRGGLTT+DRDYG INNIHHDIGTHVIHHLFPQIP
Sbjct: 317 DFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIP 376
Query: 313 HYHLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVVYYQTDHS 372
HYHLVEAT+AA+PVLG+YYREP+KSGPLPLHL +L +S++ DH+VSD G+VVYY+ D +
Sbjct: 377 HYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLEILAKSIKEDHYVSDEGEVVYYKADPN 436
Query: 373 LNG 375
L G
Sbjct: 437 LYG 439
>AT2G29980.1 | chr2:12781787-12784946 REVERSE LENGTH=387
Length = 386
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/354 (67%), Positives = 287/354 (81%), Gaps = 5/354 (1%)
Query: 21 FDAAKPPPFRIGDVRAAIPAHCWRKTPLRSLSYVARDLLIVXXXXXXXXTRIDVSVAWAA 80
FD + PPF+IGD+RAAIP HCW K+PLRS+SYV RD++ V +W
Sbjct: 26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVY----VDSWFL 81
Query: 81 WPLYWAAQGTMFWALFVLGHDCGHGSFSDSAMLNNVVGHLLHSFILVPYHGWRISHRTHH 140
WPLYWAAQGT+FWA+FVLGHDCGHGSFSD +LN+VVGH+LHSFILVPYHGWRISHRTHH
Sbjct: 82 WPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHH 141
Query: 141 QNHGHIEKDESWHPITEKLYRKLETRTKKLRFTLPFPLLAFPVYLWYRSPGKTGSHFLPS 200
QNHGH+E DESW P+ E++Y+KL T+ LR+T+P P+LA+P+YL YRSPGK GSHF P
Sbjct: 142 QNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPY 201
Query: 201 SDLFSPKEKSDVIVSTTCWCIMISLLVALACVFGSVPVLMLYGVPYLVFVMWLDLVTYLH 260
S LF+P E+ + STTCW IM L+AL+ VFG + VL +YGVPY++FVMWLD VTYLH
Sbjct: 202 SSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLH 261
Query: 261 HHGHND-LPWYRGEEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEA 319
HHGH++ LPWYRG+EWSYLRGGLTT+DRDYG NNIHHDIGTHVIHHLFPQIPHYHLV+A
Sbjct: 262 HHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDA 321
Query: 320 TKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVVYYQTDHSL 373
TKAA+ VLGRYYREP+ SG +P+HL L+ S++ DH+VSD GD+V+Y+TD L
Sbjct: 322 TKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375
>AT3G12120.1 | chr3:3860592-3861743 REVERSE LENGTH=384
Length = 383
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 191/334 (57%), Gaps = 15/334 (4%)
Query: 12 KASEDARLFFDAAKPPPFRIGDVRAAIPAHCWRKTPLRSLSYVARDLLIVXXXXXXXXTR 71
K SE + PPF +GD++ AIP HC++++ RS SY+ D++I
Sbjct: 14 KKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNY 73
Query: 72 IDV---SVAWAAWPLYWAAQGTMFWALFVLGHDCGHGSFSDSAMLNNVVGHLLHSFILVP 128
+ +++ AWPLYWA QG + ++V+ H+CGH +FSD L++ VG + HSF+LVP
Sbjct: 74 FSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVP 133
Query: 129 YHGWRISHRTHHQNHGHIEKDESWHPITE---KLYRKLETR--TKKLRFTLPFPLLAFPV 183
Y W+ SHR HH N G +E+DE + P + K Y K + + T+ F +L +P+
Sbjct: 134 YFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQF-VLGWPL 192
Query: 184 YLWYRSPGKT----GSHFLPSSDLFSPKEKSDVIVSTTCWCIMISLLVALACVFGSVPVL 239
YL + G+ HF P++ +++ +E+ + +S + L A G ++
Sbjct: 193 YLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMI 252
Query: 240 MLYGVPYLVFVMWLDLVTYLHHHGHNDLPWYRGEEWSYLRGGLTTVDRDYGWINNIHHDI 299
LYGVP L+ +L L+TYL H H LP Y EW +LRG L TVDRDYG +N + H+I
Sbjct: 253 CLYGVPLLIVNAFLVLITYL-QHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNI 311
Query: 300 -GTHVIHHLFPQIPHYHLVEATKAARPVLGRYYR 332
THV HHLF +PHY+ +EATKA +P+LG YY+
Sbjct: 312 TDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345
>AT4G30950.1 | chr4:15057278-15059673 REVERSE LENGTH=449
Length = 448
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 18/259 (6%)
Query: 78 WAAWPLYWAAQGTMFWALFVLGHDCGHGSFSDSAMLNNVVGHLLHSFILVPYHGWRISHR 137
W PL WA GT FV+GHDC H SFS + ++ ++VG L ++ PY WR H
Sbjct: 149 WYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHD 208
Query: 138 THHQNHGHIEKDESWHPITEKLYRKLETRTKKLRFTLPFPLLAFPVYLWYRSPGKTGSHF 197
HH + D +W P+ + + K + F P+ W HF
Sbjct: 209 RHHAKTNMLVHDTAWQPVPPEEFESSPVMRKAIIFGY------GPIRPWLSIAHWVNWHF 262
Query: 198 LPSSDLFSPKEKSDVIVSTTCWCIMIS----LLVALACVFGSVPVLMLYGVPYLVFVMWL 253
+ F E + V +S C ++ L+V + G V ++ P+L + W+
Sbjct: 263 --NLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLM---PWLGYHFWM 317
Query: 254 DLVTYLHHHGHNDLPWYRGEEWSYLRGGLT-TVDRDY-GWINNIHHDIGTHVIHHLFPQI 311
T +HH + +P+ +EW+ + L TV DY WI + HDI H+ HH+ P+I
Sbjct: 318 STFTMVHHTAPH-IPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRI 376
Query: 312 PHYHLVEATKAARPVLGRY 330
P Y+L A ++ + G+Y
Sbjct: 377 PSYNLRAAHESIQENWGKY 395
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,108,072
Number of extensions: 394424
Number of successful extensions: 1138
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 5
Length of query: 385
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 285
Effective length of database: 8,364,969
Effective search space: 2384016165
Effective search space used: 2384016165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)