BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0708400 Os11g0708400|AK067429
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11210.1 | chr3:3511101-3512899 REVERSE LENGTH=257 379 e-105
AT2G38180.1 | chr2:15997187-15998751 FORWARD LENGTH=313 291 3e-79
AT5G62930.1 | chr5:25254912-25256357 FORWARD LENGTH=243 192 2e-49
AT5G45920.1 | chr5:18622822-18624677 FORWARD LENGTH=242 180 8e-46
>AT3G11210.1 | chr3:3511101-3512899 REVERSE LENGTH=257
Length = 256
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 171/254 (67%), Positives = 212/254 (83%)
Query: 7 APGRPLFVLFGSSIVQFSFSNGGWGAALADIYARKADILLRGYIGWNSRRALQVIDKIFP 66
P RP VLFGSSIVQ SF +GGWGA L+++YARKADI+LRGY GWNS RAL+V+D++FP
Sbjct: 3 GPARPQIVLFGSSIVQMSFGHGGWGAILSEVYARKADIILRGYYGWNSSRALEVVDQVFP 62
Query: 67 KDSPVQPSLVIVYFGGNDSVAAHSSGLGPHVPLEEYIDNMRKIADHLKSLSEKTRVIFLS 126
KD+ VQPSLVIVYFGGNDS+A HSSGLGPHVPL EY+DNM+KIA HL+SLS+ TR+IFLS
Sbjct: 63 KDAAVQPSLVIVYFGGNDSMAPHSSGLGPHVPLTEYVDNMKKIALHLQSLSDFTRIIFLS 122
Query: 127 CPPLNEETLRKSTSTVLSEIVRTNETCRLYSEACVSLCKEMDLKVVDLWNAMQKRDDWAT 186
PP++E +R++ S LSE++RTN+ C+ YS+ACV LC+E+ L+VVDL++ QK DDW T
Sbjct: 123 SPPVDEAKVRQNQSPYLSEVIRTNDLCKTYSDACVELCQELGLEVVDLFSTFQKADDWKT 182
Query: 187 ACFTDGLHLSEEGSKIVVEEILRILKEAEWDPCLHWKAMPTEFGEDSPYDLVSSSGQSTV 246
CFTDG+HLS +GSKIV EILR++KEAEW P LHWK+MPTEF +DSPYDLVS+ G+ TV
Sbjct: 183 VCFTDGIHLSAQGSKIVAGEILRVVKEAEWHPSLHWKSMPTEFADDSPYDLVSADGKQTV 242
Query: 247 NPSDWTFHRTIQWD 260
N S+WT+ QWD
Sbjct: 243 NSSEWTYFWEEQWD 256
>AT2G38180.1 | chr2:15997187-15998751 FORWARD LENGTH=313
Length = 312
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 133/233 (57%), Positives = 180/233 (77%), Gaps = 10/233 (4%)
Query: 7 APGRPLFVLFGSSIVQFSFSNGGWGAALADIYARKADILLRGYIGWNSRRALQVIDKIFP 66
P RP VLFGSSIVQ+SF++ GWGA LAD+Y+R ADI+LRGY GWNSR AL+V+ ++FP
Sbjct: 3 GPVRPQIVLFGSSIVQYSFTDRGWGATLADLYSRTADIILRGYAGWNSRFALKVLHQVFP 62
Query: 67 KDSPVQPSLVIVYFGGNDSVAAHSSGLGPHVPLEEYIDNMRKIADHLKSLSEKTRVIFLS 126
KD+ +QPSLVIVYFGGNDS H SG GPHVPL E+I+NMRKI +HL SLS+KTRVIFL+
Sbjct: 63 KDAVIQPSLVIVYFGGNDSTHPHPSGHGPHVPLSEFIENMRKIGEHLLSLSDKTRVIFLT 122
Query: 127 CPPLNEETLRKSTSTVLSEIV--RTNETCRLYSEACVSLCKEMDLKVVDLWNAMQKRDDW 184
PP+NE K V + + R+NE CR Y+E ++LC+E+++K +D+W A+Q++DDW
Sbjct: 123 PPPMNE----KQIEIVFGDAIKGRSNELCRPYAEELLNLCREINVKGIDIWTAIQQQDDW 178
Query: 185 ATACFTDGLHLSEEGSKIVVEEILRILKEAEWDPCLHWKAMPTEFGEDSPYDL 237
+CFTDG+H + + S+IVV+EIL++L+ A+W P L+WK++P EF P+D
Sbjct: 179 LNSCFTDGIHFTAKASEIVVKEILKVLRGADWKPSLYWKSLPVEF----PFDF 227
>AT5G62930.1 | chr5:25254912-25256357 FORWARD LENGTH=243
Length = 242
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 144/245 (58%), Gaps = 17/245 (6%)
Query: 10 RPLFVLFGSSIVQFSFSNGGWGAALADIYARKADILLRGYIGWNSRRALQVIDKIFPKDS 69
RP VLFG SI SF +GGWG+ALAD Y+RKAD+++RGY G+N+R AL ++ IFP S
Sbjct: 2 RPEIVLFGDSITAQSFRSGGWGSALADAYSRKADVVVRGYGGYNTRWALFLLHHIFPLGS 61
Query: 70 PVQPSLVIVYFGGNDSVAAHSSGLGPHVPLEEYIDNMRKIADHLKSLSEKTRVIFLSCPP 129
P ++FG ND+ + HVP+EEY DN+RKI HLK S ++ ++ PP
Sbjct: 62 SSPPVATTIFFGANDAALKGRTSDRQHVPVEEYTDNVRKIVQHLKKCSPTMLIVLITPPP 121
Query: 130 LNEETLRKSTSTV-----LSEIVRTNETCRLYSEACVSLCKEMDLKVVDLWNAMQKRDDW 184
++E + ++ + E RTNET +Y++ CV+L +E+ L+ V+LW+ MQ+ +DW
Sbjct: 122 IDEAGRQSYAESIYGEKAMKEPERTNETTGVYAQHCVALAEELGLRCVNLWSKMQETNDW 181
Query: 185 ATACFTDGLHLSEEGSKIVVEEILRILKEAEWDPCLHWKAMPTEFGEDSPYDLVSSSGQS 244
+DGLHL+ EG+ +V +E+ R+ +EA P E+ P+D S
Sbjct: 182 QKKYLSDGLHLTPEGNGVVFDEVSRVFREAWLSP------------EEMPFDFPHHSHID 229
Query: 245 TVNPS 249
NPS
Sbjct: 230 GKNPS 234
>AT5G45920.1 | chr5:18622822-18624677 FORWARD LENGTH=242
Length = 241
Score = 180 bits (456), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 136/211 (64%), Gaps = 10/211 (4%)
Query: 10 RPLFVLFGSSIVQFSFSNGGWGAALADIYARKADILLRGYIGWNSRRALQVIDKIFP--- 66
R +F LFG SI + SFS+GGWGA+LAD+ RKAD++LRGY G+N+R AL+V++++FP
Sbjct: 4 RKIF-LFGDSITEESFSDGGWGASLADLLRRKADMVLRGYSGYNTRWALKVVERVFPVAE 62
Query: 67 KDSPVQPSLVIVYFGGNDSVAAHSSGLGPHVPLEEYIDNMRKIADHLKSLSEKTRVIFLS 126
+D P+ V V+FG ND+ HVPL EY N+R I LK+ +T +I ++
Sbjct: 63 EDGGDSPAAVTVFFGANDACLPERCSGFQHVPLHEYKQNLRSIVSFLKNRWPQTAIILIT 122
Query: 127 CPPLNEETLRK----STSTVLSEIVRTNETCRLYSEACVSLCKEMDLKVVDLWNAMQKRD 182
PP++EE + +T L E RTNE LY++AC+++ +E + V DLW+ MQ+
Sbjct: 123 PPPIDEEARLRYPYIENTTGLPE--RTNEVAGLYAKACIAVAEECQISVTDLWSKMQQIP 180
Query: 183 DWATACFTDGLHLSEEGSKIVVEEILRILKE 213
+W T C DGLHLS G+K+V EE+ + LKE
Sbjct: 181 NWQTECLWDGLHLSRVGNKVVFEEVAKKLKE 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,113,557
Number of extensions: 259928
Number of successful extensions: 710
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 4
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)