BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0703600 Os11g0703600|AK060355
         (247 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59350.1  | chr5:23941132-23941995 FORWARD LENGTH=288           64   9e-11

>AT5G59350.1 | chr5:23941132-23941995 FORWARD LENGTH=288
          Length = 287

 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 76/166 (45%), Gaps = 32/166 (19%)

Query: 53  ELLQLFCFKKPPALASTYAQEPHXXXXXX----------XXXXXXXXXXXXXQLMRLGSL 102
           EL+QLFCFKKP +L                                      +LM+L + 
Sbjct: 60  ELIQLFCFKKPQSLQQNNGGREGEVSMNEDGNPDLELGLMKHLNGGDLGFEAELMKLHN- 118

Query: 103 VGPTRLLFTIKEETKEDLESEDG----RSRCGRSRSLAELLHSSETPFMTPASSPL---- 154
               R LFTI EETK DLESEDG         R RSL+++ +   TP  TP +SP     
Sbjct: 119 ---QRFLFTIMEETKADLESEDGGKSRLGSRSRRRSLSDVPNDCNTPGFTPLASPKKSSS 175

Query: 155 PMD----KSFNPLFEPTVAAAV------TVSPPPKFQFLKDAEEKM 190
           P++      FNPLFE             + SPPPKF+F++DAEEK+
Sbjct: 176 PLESYPHHGFNPLFESDGELEFNKFFRSSSSPPPKFKFMRDAEEKL 221



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,108,395
Number of extensions: 157533
Number of successful extensions: 406
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)