BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0702200 Os11g0702200|AK101155
         (302 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            182   3e-46

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  182 bits (461), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/274 (35%), Positives = 155/274 (56%), Gaps = 14/274 (5%)

Query: 34  GELTVIWGRNKDEGSLRSTCDTGLYTTVVISFLTVFGHGRY-RTDLAGH--PLAGV---- 86
           G + + WG+N +EG+L +TC TG Y  V ++FL  FG+G+    +LAGH  P A      
Sbjct: 30  GGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHF 89

Query: 87  GADVKHCQKAKNVTVLLSIGGAGDQYSLPTAKSAQDVAEHLWHAYLGGGRRGVSRPFGDA 146
           G+ VK CQ ++ + V+LS+GG    YS+ + + A+ +A++LW+ +LGG  +  SRP GDA
Sbjct: 90  GSQVKDCQ-SRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGG--KSSSRPLGDA 146

Query: 147 VLDGVDVYVDRGRWGHYDELARRLRSFGREKPAVRLTASPACSLALFDDEVETMKTLSLF 206
           VLDG+D  ++ G   H+D+LAR L  F      + LT +P C     D  + +      F
Sbjct: 147 VLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFP--DRLMGSALNTKRF 204

Query: 207 ERLHVRFYNESSCDYNYFETRPFWGAWRTWTSRFPAARVQVGWPAMEEM--SGFVDPQTL 264
           + + ++FYN   C Y+   T+  + +W  WT+   A +  +G PA  E   SG++ P  L
Sbjct: 205 DYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVL 264

Query: 265 RESVLSSVQDDANYGGVMLWDRYYDKITGFGRAI 298
              +L +++    YGGVMLW +++D   G+  +I
Sbjct: 265 TSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSSI 298



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,779,063
Number of extensions: 283802
Number of successful extensions: 582
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)