BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0701600 Os11g0701600|AB027426
         (124 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303             72   5e-14

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 8/106 (7%)

Query: 25  GPLAVYWGRHKDYEGSLREACDTGRYNTVIITFYSVFGYVKGRYGLDISGH--PVAAV-- 80
           G +A+YWG++ + EG+L   C TGRY  V + F   FG  +    L+++GH  P A    
Sbjct: 30  GGIAIYWGQNGN-EGNLSATCATGRYAYVNVAFLVKFGNGQTPE-LNLAGHCNPAANTCT 87

Query: 81  --GADIKHCQSKGVQVLLSIGGQGGGYSLPSSQSAADVADNLWNAY 124
             G+ +K CQS+G++V+LS+GG  G YS+ S + A  +AD LWN +
Sbjct: 88  HFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNF 133



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,567,157
Number of extensions: 98717
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 38
Effective length of database: 8,748,793
Effective search space: 332454134
Effective search space used: 332454134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)