BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0701400 Os11g0701400|D55710
         (289 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            181   3e-46

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/275 (37%), Positives = 155/275 (56%), Gaps = 18/275 (6%)

Query: 24  STAGEDQTAVIWGRHGDEGTLREACDTGHYNTVIISFLSVFGHGRY-SLDLSGH------ 76
           S A     A+ WG++G+EG L   C TG Y  V ++FL  FG+G+   L+L+GH      
Sbjct: 25  SDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAAN 84

Query: 77  DLRRVGNDIKHCQRKGIVVLLSIGGQGGDYSLPSSRSAADVADNLWNAFLAGRRKGVLRP 136
                G+ +K CQ +GI V+LS+GG  G+YS+ S   A  +AD LWN FL G+     RP
Sbjct: 85  TCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSS--RP 142

Query: 137 FGNAAVDGIDFFIDRGSGDHYDELARKLYSYRNNKGKGVMLTATPRCRFPDRRLEKALAT 196
            G+A +DGIDF I+ GS  H+D+LAR L  + +++G+ + LT  P+C FPDR +  AL T
Sbjct: 143 LGDAVLDGIDFNIELGSPQHWDDLARTLSKF-SHRGRKIYLTGAPQCPFPDRLMGSALNT 201

Query: 197 GVFARIHVRMFGDDVNC------TAAPRESWEKWAAAYPASQVYLGLVASSE-QDPGYLS 249
             F  + ++ + ++  C      T    +SW KW  +  A + +LGL A+ E    GY+ 
Sbjct: 202 KRFDYVWIQFY-NNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIP 260

Query: 250 PKPLYYTLVMYIRDRLNYGGKMIWDRYYDKKTDYS 284
           P  L   ++  ++    YGG M+W +++D K  YS
Sbjct: 261 PDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYS 295



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,684,664
Number of extensions: 295268
Number of successful extensions: 487
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)