BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0701100 Os11g0701100|AK064356
         (290 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            167   6e-42

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  167 bits (423), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 150/268 (55%), Gaps = 20/268 (7%)

Query: 34  VYWGRHKEEGSLREACDTGRYTTVIITFYNAFGHGRY-SLDISGH--PLAAV----GADI 86
           +YWG++  EG+L   C TGRY  V + F   FG+G+   L+++GH  P A      G+ +
Sbjct: 34  IYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQV 93

Query: 87  KHCQSRGITVLLSIGGQGGAYSLPTNASAADVADNLWNAYLGGHRAGVARPFGDDAAVDG 146
           K CQSRGI V+LS+GG  G YS+ +   A  +AD LWN +LGG  +  +RP G DA +DG
Sbjct: 94  KDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSS--SRPLG-DAVLDG 150

Query: 147 IDFFIDQGGADHYDDLARRLDGYNKYYRGRVGVLLTATTRCSYPDHRLEKALATGVFARI 206
           IDF I+ G   H+DDLAR L  ++  +RGR  + LT   +C +PD  +  AL T  F  +
Sbjct: 151 IDFNIELGSPQHWDDLARTLSKFS--HRGR-KIYLTGAPQCPFPDRLMGSALNTKRFDYV 207

Query: 207 HVRMFGDEQCTMSPRY------SWEKWAAAFPGSKVYIGLVASPEQDSAWMFQKD-LYYE 259
            ++ + +  C+ S         SW KW  +    K ++GL A+PE   +     D L  +
Sbjct: 208 WIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVLTSQ 267

Query: 260 MLQFVRSLPNYGGLAIYDRYFDKKANYT 287
           +L  ++    YGG+ ++ +++D K  Y+
Sbjct: 268 ILPTLKKSRKYGGVMLWSKFWDDKNGYS 295



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,320,731
Number of extensions: 273343
Number of successful extensions: 435
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)