BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0677500 Os11g0677500|011-079-B05
         (316 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47300.2  | chr2:19418733-19422076 FORWARD LENGTH=827          164   5e-41

>AT2G47300.2 | chr2:19418733-19422076 FORWARD LENGTH=827
          Length = 826

 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/323 (37%), Positives = 156/323 (48%), Gaps = 44/323 (13%)

Query: 1   MPCFPYDYPDSKAYSLFMAEEAAVLDKATNCXXXXXXXXXXXXXXLWHCVIASFRKGDGI 60
           +P FP D+PD KAYS F   EAA L++                   W+ +  +   G+G 
Sbjct: 528 LPFFPSDFPDCKAYSSFTLSEAADLEEKAQRRPPAIRPFRIPIPPPWNSIHVTRSIGEGS 587

Query: 61  LSNLEDDLKSVATVLSESIPVNSNSGDAESSPTSAPTSFQLLVPRTIQVLRQYVKKIDEK 120
                 + +SV       + ++S  G+           F  +V RT   L  +++     
Sbjct: 588 NQKFSSNGRSV-------VEISSYGGNL----------FDGIVARTSDSLTTFLQT---- 626

Query: 121 YLNSSDMEAVTGKSSLVSGDNVKT------------GCSINRLCLVRVLIRAFKEGSFEE 168
              S +M      +S  S D + T              S N+LCLVRVL+ AFKEGSFEE
Sbjct: 627 -FTSDNMLLFPHNTSKPSTDLMMTLQEDDKKVRAQIHQSSNKLCLVRVLLHAFKEGSFEE 685

Query: 169 GAVVCAPLPSDLSAWNRKTRSXXXXXXXXXXXXXXXPQSHVSSYFSWLDPSTSNLQLPNG 228
           GAVVCAP  +D+S                       PQS VSSYF      T  L +P  
Sbjct: 686 GAVVCAPTLADISL-------LKSSCSEGEDGRVTIPQSSVSSYFQEQPCGTWELNVPED 738

Query: 229 DSTRKAFRWPIGFVTTGFVHGSSGQDAVAVAFCEAKLLAVLRRQQWRTHESLKR-KDICV 287
             T ++ RWPIGFVTTGFV GS  +   A AFC+A LL  LR +QWR  +  +R K I V
Sbjct: 739 TLTEQSHRWPIGFVTTGFVRGS--KKPAAEAFCDAVLLGRLRDEQWRDKDVRRRKKQIYV 796

Query: 288 LVRNARSAAYRRALATIVLEQQE 310
           LVRN RS+A+R ALATIVLEQQ+
Sbjct: 797 LVRNLRSSAFRLALATIVLEQQD 819



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,096,152
Number of extensions: 217690
Number of successful extensions: 613
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,392,385
Effective search space: 1821147545
Effective search space used: 1821147545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)