BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0672400 Os11g0672400|J023100I24
(182 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47500.1 | chr2:19493247-19497882 FORWARD LENGTH=984 96 7e-21
AT5G27000.1 | chr5:9498099-9502951 FORWARD LENGTH=988 96 1e-20
AT3G44730.1 | chr3:16285888-16290852 FORWARD LENGTH=1088 95 2e-20
AT1G09170.1 | chr1:2956589-2962207 REVERSE LENGTH=1011 91 2e-19
AT3G10310.1 | chr3:3190208-3195005 FORWARD LENGTH=923 86 7e-18
AT1G63640.1 | chr1:23589234-23595139 REVERSE LENGTH=1072 83 7e-17
AT5G41310.1 | chr5:16516634-16522392 REVERSE LENGTH=962 82 2e-16
AT1G73860.1 | chr1:27771188-27775977 REVERSE LENGTH=1026 76 8e-15
AT1G18410.1 | chr1:6336528-6342460 REVERSE LENGTH=1141 76 1e-14
AT2G22610.1 | chr2:9599550-9604626 FORWARD LENGTH=1084 61 4e-10
AT4G27180.1 | chr4:13615057-13618689 REVERSE LENGTH=746 58 3e-09
AT5G54670.1 | chr5:22209912-22213843 FORWARD LENGTH=755 56 9e-09
AT4G05190.1 | chr4:2675338-2679482 FORWARD LENGTH=791 55 2e-08
AT4G21270.1 | chr4:11329579-11333884 REVERSE LENGTH=794 55 2e-08
AT1G72250.2 | chr1:27192902-27198118 FORWARD LENGTH=1204 51 4e-07
AT5G27550.1 | chr5:9727634-9731323 REVERSE LENGTH=766 48 3e-06
>AT2G47500.1 | chr2:19493247-19497882 FORWARD LENGTH=984
Length = 983
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 52/57 (91%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGGQAKTLMFVHI+PE DA+GE+ISTLKFAERVATVELGAA+ N + +VKELKEQ+
Sbjct: 689 LGGQAKTLMFVHISPEADAVGETISTLKFAERVATVELGAARVNNDTSDVKELKEQI 745
>AT5G27000.1 | chr5:9498099-9502951 FORWARD LENGTH=988
Length = 987
Score = 95.5 bits (236), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/57 (77%), Positives = 51/57 (89%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGG AKTLMFVHI+PEPD +GE+ISTLKFAERV +VELGAA+ NK+ EVKELKEQ+
Sbjct: 686 LGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVKELKEQI 742
>AT3G44730.1 | chr3:16285888-16290852 FORWARD LENGTH=1088
Length = 1087
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 66/100 (66%), Gaps = 24/100 (24%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQVLIP 106
LGGQAKTLMFVHI PE +A+GE+ISTLKFA+RVA++ELGAA+SNKE GE+++LK+++
Sbjct: 670 LGGQAKTLMFVHINPEVNAVGETISTLKFAQRVASIELGAARSNKETGEIRDLKDEI--- 726
Query: 107 APPFHFXXXXXXXXXXXXXXXXXXKAALAKKDGETESIRS 146
K+A+ KK+ E E +RS
Sbjct: 727 ---------------------SSLKSAMEKKEAELEQLRS 745
>AT1G09170.1 | chr1:2956589-2962207 REVERSE LENGTH=1011
Length = 1010
Score = 91.3 bits (225), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/57 (73%), Positives = 52/57 (91%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGGQAKTLMF+HI+PE + +GE++STLKFAERVATV+LGAA+ NK+ EVKELKEQ+
Sbjct: 689 LGGQAKTLMFIHISPELEDLGETLSTLKFAERVATVDLGAARVNKDTSEVKELKEQI 745
>AT3G10310.1 | chr3:3190208-3195005 FORWARD LENGTH=923
Length = 922
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 50/57 (87%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGGQAKTLMF H++PE D+ GE+ISTLKFA+RV+TVELGAA+++KE EV LKEQ+
Sbjct: 617 LGGQAKTLMFAHLSPEEDSFGETISTLKFAQRVSTVELGAARAHKETREVMHLKEQI 673
>AT1G63640.1 | chr1:23589234-23595139 REVERSE LENGTH=1072
Length = 1071
Score = 83.2 bits (204), Expect = 7e-17, Method: Composition-based stats.
Identities = 39/57 (68%), Positives = 49/57 (85%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGGQAKTLMFV + P+ D+ E++STLKFAERV+ VELGAAKS+KEG +V++L EQV
Sbjct: 765 LGGQAKTLMFVQVNPDGDSYAETVSTLKFAERVSGVELGAAKSSKEGRDVRQLMEQV 821
>AT5G41310.1 | chr5:16516634-16522392 REVERSE LENGTH=962
Length = 961
Score = 82.0 bits (201), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/57 (68%), Positives = 48/57 (84%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGGQAKTLMFV I P+ D+ E++STLKFAERV+ VELGAA+S KEG +V++L EQV
Sbjct: 697 LGGQAKTLMFVQINPDEDSYAETVSTLKFAERVSGVELGAARSYKEGRDVRQLMEQV 753
>AT1G73860.1 | chr1:27771188-27775977 REVERSE LENGTH=1026
Length = 1025
Score = 76.3 bits (186), Expect = 8e-15, Method: Composition-based stats.
Identities = 36/57 (63%), Positives = 48/57 (84%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGG+AKTLMFV + P+ + ES+STLKFAERV+ VELGAAK++KEG +V++L EQ+
Sbjct: 803 LGGRAKTLMFVQLNPDATSYSESMSTLKFAERVSGVELGAAKTSKEGKDVRDLMEQL 859
>AT1G18410.1 | chr1:6336528-6342460 REVERSE LENGTH=1141
Length = 1140
Score = 75.9 bits (185), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/56 (66%), Positives = 47/56 (83%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQ 102
LGG+AKTLMFV + P+ + ES+STLKFAERV+ VELGAAKS+K+G +V+EL EQ
Sbjct: 917 LGGRAKTLMFVQLNPDITSYSESMSTLKFAERVSGVELGAAKSSKDGRDVRELMEQ 972
>AT2G22610.1 | chr2:9599550-9604626 FORWARD LENGTH=1084
Length = 1083
Score = 60.8 bits (146), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGG +KTLMFV I+P + E++S+L FA RV VELG A+ + GE+++LK V
Sbjct: 704 LGGDSKTLMFVQISPSEHDVSETLSSLNFATRVRGVELGPARKQVDTGEIQKLKAMV 760
>AT4G27180.1 | chr4:13615057-13618689 REVERSE LENGTH=746
Length = 745
Score = 58.2 bits (139), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 39 VSFSIFPWLGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAA 87
+++ + P LGG +KTLMFV+I PEP + GES+ +L+FA RV E+G A
Sbjct: 681 LTYLLQPCLGGDSKTLMFVNITPEPSSTGESLCSLRFAARVNACEIGTA 729
>AT5G54670.1 | chr5:22209912-22213843 FORWARD LENGTH=755
Length = 754
Score = 56.2 bits (134), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 39 VSFSIFPWLGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAK 88
+++ + P LGG AKTLMFV+IAPE + GES+ +L+FA RV E+G +
Sbjct: 690 LTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEIGTPR 739
>AT4G05190.1 | chr4:2675338-2679482 FORWARD LENGTH=791
Length = 790
Score = 55.5 bits (132), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 39 VSFSIFPWLGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELG 85
+++ + P LGG +KTLMFV+I+P+P + GES+ +L+FA RV E+G
Sbjct: 726 LTYLLQPCLGGDSKTLMFVNISPDPSSTGESLCSLRFAARVNACEIG 772
>AT4G21270.1 | chr4:11329579-11333884 REVERSE LENGTH=794
Length = 793
Score = 55.1 bits (131), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 39 VSFSIFPWLGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELG 85
+++ + P LGG +KTLMFV+I+P+P + GES+ +L+FA RV E+G
Sbjct: 729 LTYLLQPCLGGDSKTLMFVNISPDPTSAGESLCSLRFAARVNACEIG 775
>AT1G72250.2 | chr1:27192902-27198118 FORWARD LENGTH=1204
Length = 1203
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGG +KTLMFV I+P + E++ +L FA RV +ELG AK + E+ + K+ V
Sbjct: 790 LGGDSKTLMFVQISPNENDQSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMV 846
>AT5G27550.1 | chr5:9727634-9731323 REVERSE LENGTH=766
Length = 765
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKE 101
LGG KTLMFV I+P +GE++ +L FA RV +E G A+ + E+ + K+
Sbjct: 421 LGGDCKTLMFVQISPSSADLGETLCSLNFASRVRGIESGPARKQADVSELLKSKQ 475
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,355,973
Number of extensions: 107800
Number of successful extensions: 331
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 16
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)