BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0672300 Os11g0672300|AK066296
         (214 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35920.1  | chr4:17012106-17014192 REVERSE LENGTH=422          109   9e-25
AT2G17780.1  | chr2:7725155-7726952 REVERSE LENGTH=417            104   3e-23

>AT4G35920.1 | chr4:17012106-17014192 REVERSE LENGTH=422
          Length = 421

 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 84/125 (67%)

Query: 4   VAQASTIAQFAGVDAYGLIKMIAEAAQTVRRNRATCLQLARRLKMIGDLLKQLHGAQLMQ 63
           + + +++AQ  G+DA  LI +I +AA T   ++  C Q A+ LK+IG+LL+QL  +++ +
Sbjct: 8   LGEIASVAQLTGLDAVKLIGLIVKAANTAWMHKKNCRQFAQHLKLIGNLLEQLKISEMKK 67

Query: 64  QPETRNPVEQLEETLRRAYLLVRSCQGRSYVYRCFMGGRHADELREVQSEIAFYLQLFPL 123
            PETR P+E LE+ LRR+YLLV SC+ RSY+Y   MG     + R+ Q EI  +L++ PL
Sbjct: 68  YPETREPLEGLEDALRRSYLLVNSCRDRSYLYLLAMGWNIVYQFRKHQDEIDRFLKIIPL 127

Query: 124 VSYVD 128
           ++ VD
Sbjct: 128 ITLVD 132



>AT2G17780.1 | chr2:7725155-7726952 REVERSE LENGTH=417
          Length = 416

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 81/125 (64%)

Query: 4   VAQASTIAQFAGVDAYGLIKMIAEAAQTVRRNRATCLQLARRLKMIGDLLKQLHGAQLMQ 63
           + + +++AQ  G+DA  LI MI  AA T R ++  C Q A  LK+I +LL+Q+  +++ Q
Sbjct: 8   LGEIASVAQLTGIDALKLIGMIVNAANTARMHKKNCRQFAHHLKLIRNLLEQIKNSEMNQ 67

Query: 64  QPETRNPVEQLEETLRRAYLLVRSCQGRSYVYRCFMGGRHADELREVQSEIAFYLQLFPL 123
           + E   P++ L++ LRR+Y+LV+SCQ +SY+Y   MG    ++  + Q+EI  +L++ PL
Sbjct: 68  RSEILEPLQGLDDALRRSYILVKSCQEKSYLYLLAMGWNIVNQFEKAQNEIDLFLKIVPL 127

Query: 124 VSYVD 128
           ++  D
Sbjct: 128 INMAD 132



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,362,279
Number of extensions: 167471
Number of successful extensions: 474
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)