BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0645200 Os11g0645200|J075063E04
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04420.1  | chr1:1191634-1193699 FORWARD LENGTH=413             80   2e-16
AT1G04690.1  | chr1:1313662-1315420 FORWARD LENGTH=329             54   2e-08

>AT1G04420.1 | chr1:1191634-1193699 FORWARD LENGTH=413
          Length = 412

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 11  DLAVSRLCFGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYPVPQRSETHGRSEEFL 70
           DL +S +  GTMT GEQ+   ES  +L  A + G+N  D+AE YP+P + ET G+++ ++
Sbjct: 65  DLNISEVTMGTMTFGEQNTEKESHEMLSYAIEEGINCIDTAEAYPIPMKKETQGKTDLYI 124

Query: 71  GRWLRARRAPRDSVVLATKVNG 92
             WL++++  RD +VLATKV G
Sbjct: 125 SSWLKSQQ--RDKIVLATKVCG 144



>AT1G04690.1 | chr1:1313662-1315420 FORWARD LENGTH=329
          Length = 328

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 12 LAVSRLCFGT-MTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYPVPQRSETHGRSEEFL 70
          L VS L FG  +T G Q  + E+  +L    D GVNFFD+AE+Y        +GR+EE +
Sbjct: 11 LKVSTLSFGAWVTFGNQLDVKEAKSILQCCRDHGVNFFDNAEVY-------ANGRAEEIM 63

Query: 71 GRWLRARRAPRDSVVLATKVNGG 93
          G+ +R     R  +V++TK+  G
Sbjct: 64 GQAIRELGWRRSDIVISTKIFWG 86



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,270,509
Number of extensions: 75607
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)