BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0644800 Os11g0644800|J065076B10
(74 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28420.2 | chr4:14055687-14057409 FORWARD LENGTH=450 98 9e-22
AT5G53970.1 | chr5:21910676-21912594 FORWARD LENGTH=415 97 1e-21
AT4G28410.1 | chr4:14052391-14054846 FORWARD LENGTH=448 96 3e-21
AT2G24850.1 | chr2:10583070-10585152 REVERSE LENGTH=446 96 4e-21
AT5G36160.1 | chr5:14233261-14235129 REVERSE LENGTH=421 94 1e-20
AT4G23590.1 | chr4:12307195-12309445 FORWARD LENGTH=425 89 6e-19
AT2G20610.1 | chr2:8878150-8880298 REVERSE LENGTH=463 88 1e-18
AT4G23600.1 | chr4:12310657-12312885 FORWARD LENGTH=423 80 2e-16
>AT4G28420.2 | chr4:14055687-14057409 FORWARD LENGTH=450
Length = 449
Score = 97.8 bits (242), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 53/70 (75%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
+AETA++LGI +I DEVY +FG FVPM F+ ITPVIT+G +SK +++PGWR+GW+
Sbjct: 223 VAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLGGISKGWIVPGWRIGWI 282
Query: 61 AFCDPNGALK 70
A DP G LK
Sbjct: 283 ALNDPRGILK 292
>AT5G53970.1 | chr5:21910676-21912594 FORWARD LENGTH=415
Length = 414
Score = 97.4 bits (241), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 53/70 (75%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
IAE+A++LG +IADEVY H+ FG FVPM F I PV+T+G+LSK++++PGWRLGW
Sbjct: 196 IAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF 255
Query: 61 AFCDPNGALK 70
DP+G+ K
Sbjct: 256 VTTDPSGSFK 265
>AT4G28410.1 | chr4:14052391-14054846 FORWARD LENGTH=448
Length = 447
Score = 96.3 bits (238), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 55/73 (75%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
+AE AR+LGI +I+DEVY ++G +KFVPM F+ ITPV+T+G++SK +++PGWR+GW+
Sbjct: 231 VAEVARKLGIMVISDEVYNQTIYGENKFVPMGIFSSITPVVTLGSISKGWLVPGWRIGWI 290
Query: 61 AFCDPNGALKHVR 73
A DP K R
Sbjct: 291 AMNDPKNVFKTTR 303
>AT2G24850.1 | chr2:10583070-10585152 REVERSE LENGTH=446
Length = 445
Score = 95.9 bits (237), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/67 (59%), Positives = 53/67 (79%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
+AE AR+LGI II+DEVY H+V+G F+PM FA I PVIT+G++SK ++ PGWR+GW+
Sbjct: 213 VAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIAPVITLGSISKGWVNPGWRVGWI 272
Query: 61 AFCDPNG 67
A DPNG
Sbjct: 273 AMNDPNG 279
>AT5G36160.1 | chr5:14233261-14235129 REVERSE LENGTH=421
Length = 420
Score = 94.4 bits (233), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 52/70 (74%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
IAETA +LGI +IADEVY H FG FV MA FA + PVI +GA+SK++ +PGWRLGW+
Sbjct: 205 IAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAELVPVIVLGAISKRWFVPGWRLGWM 264
Query: 61 AFCDPNGALK 70
DP+G +K
Sbjct: 265 VTLDPHGIMK 274
>AT4G23590.1 | chr4:12307195-12309445 FORWARD LENGTH=425
Length = 424
Score = 88.6 bits (218), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 52/73 (71%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
+A ARELGI +++DEVY VFG + FVPM F+ I PVIT+G++SK +++PGWR GWL
Sbjct: 198 LATLARELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLGSISKGWIVPGWRTGWL 257
Query: 61 AFCDPNGALKHVR 73
A D NG + +
Sbjct: 258 ALHDLNGVFRSTK 270
>AT2G20610.1 | chr2:8878150-8880298 REVERSE LENGTH=463
Length = 462
Score = 87.8 bits (216), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
+AETAR+LGI +I+DEVY +FG + FV M FA I PV+T+ +SK +++PGW++GW+
Sbjct: 229 VAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWI 288
Query: 61 AFCDPNGALKHVR 73
A DP G + +
Sbjct: 289 ALNDPEGVFETTK 301
>AT4G23600.1 | chr4:12310657-12312885 FORWARD LENGTH=423
Length = 422
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 51/73 (69%)
Query: 1 IAETARELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGALSKKFMLPGWRLGWL 60
+AE A+EL I +++DEV+ +FG + FVPM F+ I PV+T+G++SK + +PGWR GWL
Sbjct: 198 LAELAKELKIMVVSDEVFRWTLFGSNPFVPMGKFSSIVPVVTLGSISKGWKVPGWRTGWL 257
Query: 61 AFCDPNGALKHVR 73
D +G ++ +
Sbjct: 258 TLHDLDGVFRNTK 270
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,591,112
Number of extensions: 49474
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 8
Length of query: 74
Length of database: 11,106,569
Length adjustment: 46
Effective length of query: 28
Effective length of database: 9,845,433
Effective search space: 275672124
Effective search space used: 275672124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)