BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0637800 Os11g0637800|J013091J07
(100 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G57650.1 | chr3:21349751-21352839 FORWARD LENGTH=390 174 1e-44
AT1G51260.1 | chr1:19003460-19005512 REVERSE LENGTH=377 158 6e-40
AT1G75020.1 | chr1:28171779-28173357 FORWARD LENGTH=379 73 4e-14
AT3G18850.1 | chr3:6499529-6500840 REVERSE LENGTH=376 69 4e-13
>AT3G57650.1 | chr3:21349751-21352839 FORWARD LENGTH=390
Length = 389
Score = 174 bits (440), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 84/90 (93%)
Query: 11 GNEHALVISNHRSDIDWLIGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFAEYLFLE 70
G EHALV+ NHRSDIDWL+GWILAQRSGCLGS LAVMKKSSKFLPVIGWSMWF+EYLFLE
Sbjct: 81 GKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYLFLE 140
Query: 71 RSWAKDEKTLKWGLQRLKDFPRPFWLALFV 100
R+WAKDE TLK GLQRL DFPRPFWLALFV
Sbjct: 141 RNWAKDESTLKSGLQRLSDFPRPFWLALFV 170
>AT1G51260.1 | chr1:19003460-19005512 REVERSE LENGTH=377
Length = 376
Score = 158 bits (399), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 82/90 (91%)
Query: 11 GNEHALVISNHRSDIDWLIGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFAEYLFLE 70
G EHALV+SNHRSDIDWLIGW++AQR GCLGS+LA+MKK +K+LP+IGWSMWF++Y+FLE
Sbjct: 82 GKEHALVLSNHRSDIDWLIGWVMAQRVGCLGSSLAIMKKEAKYLPIIGWSMWFSDYIFLE 141
Query: 71 RSWAKDEKTLKWGLQRLKDFPRPFWLALFV 100
RSWAKDE TLK G +RL+DFP FWLALFV
Sbjct: 142 RSWAKDENTLKAGFKRLEDFPMTFWLALFV 171
>AT1G75020.1 | chr1:28171779-28173357 FORWARD LENGTH=379
Length = 378
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 12 NEHALVISNHRSDIDWLIGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFAEYLFLER 71
+ L+I+NHR+++DW+ W +A R GCLG V+K S LP+ GW E++ +ER
Sbjct: 96 EKRVLLIANHRTEVDWMYLWNIALRKGCLGYIKYVLKSSLMKLPIFGWGFHVLEFIPVER 155
Query: 72 SWAKDEKTLKWGLQRLKDFPRPFWLALF 99
DE L L KD P WLALF
Sbjct: 156 KREVDEPVLLQMLSSFKDPQEPLWLALF 183
>AT3G18850.1 | chr3:6499529-6500840 REVERSE LENGTH=376
Length = 375
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 13 EHALVISNHRSDIDWLIGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFAEYLFLERS 72
+ L+I+NHR+++DW+ W LA R G +G+ V+K S LP+ GW+ E++ +ER
Sbjct: 92 DRVLLIANHRTEVDWMYFWDLALRKGQIGNIKYVLKSSLMKLPLFGWAFHLFEFIPVERR 151
Query: 73 WAKDEKTLKWGLQRLKDFPRPFWLALF 99
W DE L+ + KD WLALF
Sbjct: 152 WEVDEANLRQIVSSFKDPRDALWLALF 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,387,111
Number of extensions: 86515
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 4
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)