BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0634500 Os11g0634500|J065056B02
         (78 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33865.1  | chr4:16233395-16234114 REVERSE LENGTH=57           106   2e-24
AT3G44010.1  | chr3:15800175-15801132 REVERSE LENGTH=57           106   2e-24
AT3G43980.1  | chr3:15778555-15779235 REVERSE LENGTH=57           106   2e-24

>AT4G33865.1 | chr4:16233395-16234114 REVERSE LENGTH=57
          Length = 56

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/54 (90%), Positives = 51/54 (94%)

Query: 1  MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
          MGHSNVWNSHPK YGPGSR+CRVCGN HGLIRKYGL CCRQCFRSNAK+IGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54



>AT3G44010.1 | chr3:15800175-15801132 REVERSE LENGTH=57
          Length = 56

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/54 (90%), Positives = 51/54 (94%)

Query: 1  MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
          MGHSNVWNSHPK YGPGSR+CRVCGN HGLIRKYGL CCRQCFRSNAK+IGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54



>AT3G43980.1 | chr3:15778555-15779235 REVERSE LENGTH=57
          Length = 56

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/54 (90%), Positives = 51/54 (94%)

Query: 1  MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
          MGHSNVWNSHPK YGPGSR+CRVCGN HGLIRKYGL CCRQCFRSNAK+IGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,232,352
Number of extensions: 77036
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 3
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)