BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0629400 Os11g0629400|AK099444
         (115 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69230.1  | chr1:26026543-26027085 REVERSE LENGTH=111           70   2e-13
AT1G26355.1  | chr1:9117950-9118611 REVERSE LENGTH=114             68   7e-13
AT2G03680.1  | chr2:1121398-1121850 FORWARD LENGTH=120             65   9e-12
AT3G02180.1  | chr3:404989-405457 FORWARD LENGTH=123               63   3e-11
AT5G15600.1  | chr5:5078405-5078863 FORWARD LENGTH=128             60   2e-10
AT4G23496.1  | chr4:12257914-12258297 REVERSE LENGTH=100           46   3e-06

>AT1G69230.1 | chr1:26026543-26027085 REVERSE LENGTH=111
          Length = 110

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 61  EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           + +K++PAG+ S  ANNY RA+GQN GNF+TDRPSTKVH+AP
Sbjct: 54  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAP 95



>AT1G26355.1 | chr1:9117950-9118611 REVERSE LENGTH=114
          Length = 113

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/39 (76%), Positives = 32/39 (82%)

Query: 64  KEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           K+IPAGI  +  NNY RA GQN GNFLTDRPSTKVHAAP
Sbjct: 59  KQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAP 97



>AT2G03680.1 | chr2:1121398-1121850 FORWARD LENGTH=120
          Length = 119

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 35/42 (83%), Gaps = 1/42 (2%)

Query: 61  EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           E  K+IPAGI+ T  NNY RA+GQN GNFLTDRPSTKVHAAP
Sbjct: 65  ELNKQIPAGIK-TPVNNYARAEGQNTGNFLTDRPSTKVHAAP 105



>AT3G02180.1 | chr3:404989-405457 FORWARD LENGTH=123
          Length = 122

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 34/39 (87%), Gaps = 1/39 (2%)

Query: 64  KEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           K+  AG++ +  NNYFR++GQNCGNFLTDRPSTKVHAAP
Sbjct: 64  KKTSAGVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAP 101



>AT5G15600.1 | chr5:5078405-5078863 FORWARD LENGTH=128
          Length = 127

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 62  KMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           K +E  AG++ +  NNY+R+ GQNCGNFLT+RPSTKVHAAP
Sbjct: 69  KTEENSAGVRGSP-NNYYRSDGQNCGNFLTERPSTKVHAAP 108



>AT4G23496.1 | chr4:12257914-12258297 REVERSE LENGTH=100
          Length = 99

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 22/27 (81%)

Query: 76  NNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           NNY R QGQN GNF+TDRP+TKV + P
Sbjct: 60  NNYQRVQGQNSGNFVTDRPTTKVKSVP 86



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.126    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 847,775
Number of extensions: 18441
Number of successful extensions: 16
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 6
Length of query: 115
Length of database: 11,106,569
Length adjustment: 84
Effective length of query: 31
Effective length of database: 8,803,625
Effective search space: 272912375
Effective search space used: 272912375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)