BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0618500 Os11g0618500|AK099744
(435 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19090.1 | chr4:10449900-10452757 FORWARD LENGTH=752 74 2e-13
AT5G45470.1 | chr5:18422164-18424764 REVERSE LENGTH=867 71 1e-12
AT5G45540.1 | chr5:18458294-18460705 REVERSE LENGTH=804 71 1e-12
AT5G45480.1 | chr5:18426296-18428929 REVERSE LENGTH=878 69 3e-12
AT5G45530.1 | chr5:18454316-18457222 REVERSE LENGTH=799 65 8e-11
AT4G19080.1 | chr4:10448813-10449796 REVERSE LENGTH=328 63 4e-10
>AT4G19090.1 | chr4:10449900-10452757 FORWARD LENGTH=752
Length = 751
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 27/200 (13%)
Query: 186 ILVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTGELQKAYTVSNCLSWYCMYL 245
+L+WHIAT LC + + E E +S +S Y MYL
Sbjct: 568 LLIWHIATELCYQEEDS----------------AKENCDKSEYHTNRKISKIISDYMMYL 611
Query: 246 LASKPKLLPETILMSKKAFQDAVQCAHEMLSDCHSWQSIYNKLMKEAQKALVQGTHGL-- 303
L +PKL+ E + K F+D + A + N +K A K ++ +
Sbjct: 612 LIMQPKLMSEVAGIGKIRFRDTLAEADRFFKKMGIIRDSRN--VKLASKEILSADTSIEP 669
Query: 304 -----NLSGNILQQGAILANEL--IKKEDQKCRWEILSDVWVHLLVHIAPSSDAAALAED 356
N S ++L + + LA EL ++K + +W+ILS VW+ L H A DA E
Sbjct: 670 REVKGNHSKSVLFEASSLAKELQRVEKNFGEDKWKILSKVWLEFLFHAASHCDATTRMEL 729
Query: 357 LKSGVEFVTVIWALFCHCGI 376
L G EF+ +W L H G+
Sbjct: 730 LSKGGEFINFVWLLMAHFGL 749
>AT5G45470.1 | chr5:18422164-18424764 REVERSE LENGTH=867
Length = 866
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 32/232 (13%)
Query: 155 LSRDLPLSRVSDRAERYWLACLAEVPTCSRVILVWHIATSLCEIKLANDHKINLTTMSRL 214
L +LP+ AER L + +L+WHIAT LC H+
Sbjct: 638 LRENLPVD-----AEREKLVRYVTKVDYDQSLLMWHIATELC----YQQHEKETIPEG-- 686
Query: 215 SSFLVDEKALTGELQKAYT---VSNCLSWYCMYLLASKPKLLPETILMSKKAFQDAVQCA 271
E +K Y+ S +S Y MYLL +P L+ E + K F+D +
Sbjct: 687 ----------YDEQRKHYSNREFSKIISDYMMYLLILQPGLMSEVAGIGKIRFRDTLAET 736
Query: 272 HEMLSDCH-----SWQSIYNKLMKEAQKALVQGTHGLNLSGNILQQGAILANEL--IKKE 324
H+ H S ++ ++ + G G + S ++L + LA +L ++K
Sbjct: 737 HKFFQRRHIENDRSVETATLNILDVESEIEPMGVKG-DRSKSVLFDASRLAKDLAEMEKT 795
Query: 325 DQKCRWEILSDVWVHLLVHIAPSSDAAALAEDLKSGVEFVTVIWALFCHCGI 376
K +WEILS VWV LL + A D+ A E L G E + +W L H G+
Sbjct: 796 HNKDKWEILSKVWVELLCYAACHCDSTAHVEQLSRGGELINFVWLLMAHFGL 847
>AT5G45540.1 | chr5:18458294-18460705 REVERSE LENGTH=804
Length = 803
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 186 ILVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTGELQKAYTVSNCLSWYCMYL 245
IL+WHIAT L K D K+ T S+ E+ E K LS Y MYL
Sbjct: 596 ILLWHIATELLYQK-PIDKKV--TEKEEHSTNREKEEHSNREFSK------ILSDYMMYL 646
Query: 246 LASKPKLLPETILMSKKAFQDAVQCAHEMLSDCHSWQSIYNK--LMKEAQKALVQGTHGL 303
L +P L+ ++K F+D + A + H +S Y K LMKEA +A++ +
Sbjct: 647 LIVQPTLMSAVSGIAKIRFRDTCEEAKDFFQRRHVDKSRYVKKNLMKEACRAILSVNTEI 706
Query: 304 N-------LSGNILQQGAILANELIKKEDQKCRWEILSDVWVHLLVHIAPSSDAAALAED 356
+ S ++L ++LA EL+ + + WE++S VWV LL + + D+ A
Sbjct: 707 DPMAVKGDRSKSVLFDASVLAKELMNEGENM--WEVVSKVWVELLCYASLHCDSQEHASQ 764
Query: 357 LKSGVEFVTVIWALFCHCGI 376
L G E + +W L H G+
Sbjct: 765 LSKGGELINFVWLLMAHFGL 784
>AT5G45480.1 | chr5:18426296-18428929 REVERSE LENGTH=878
Length = 877
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 84/207 (40%), Gaps = 39/207 (18%)
Query: 186 ILVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTGELQKAYTVSNCLSWYCMYL 245
+LVWHIAT L L K T A S LS Y MYL
Sbjct: 675 LLVWHIATEL----------------------LYQTKKGTKANHSAREFSKILSDYMMYL 712
Query: 246 LASKPKLLPETILMSKKAFQDAVQCAHEMLSDCHSWQSIYNKLMKEAQKALVQ------- 298
L +P L+ + + K F+D + A H I K +A++A V
Sbjct: 713 LMMQPTLMSAVVGIGKIRFRDTCEEAQRFFDRRHI-MGISAKKAPDAKEASVAILSVAVP 771
Query: 299 -GTHGLNLSGN----ILQQGAILANELI----KKEDQKCRWEILSDVWVHLLVHIAPSSD 349
+++ G+ +L GA+LA EL KED W+I+S VWV LL + A
Sbjct: 772 AKAEPIDVKGDRSKSVLFDGAMLAKELKGLRKNKEDDSEMWKIMSQVWVELLSYAATKCG 831
Query: 350 AAALAEDLKSGVEFVTVIWALFCHCGI 376
A A L G E ++ +W L H G+
Sbjct: 832 AIEHAAQLSKGGELISFVWLLMAHFGL 858
>AT5G45530.1 | chr5:18454316-18457222 REVERSE LENGTH=799
Length = 798
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 176 LAEVPTCSRVI---------LVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTG 226
L EV T R I L+WHIAT LC K M +LS D++
Sbjct: 578 LMEVDTLMRYIEKVDYDQSLLLWHIATELCF------QKEEGGKMEKLSREGYDDREF-- 629
Query: 227 ELQKAYTVSNCLSWYCMYLLASKPKLLPETILMSKKAFQDAVQCAHEM--------LSDC 278
S +S Y MYLL +PKL+ E + F+D A L D
Sbjct: 630 --------SKIISDYMMYLLIMRPKLMSEVAGIGTIRFRDTKAEAERFFKGRQIKDLRDM 681
Query: 279 HSWQSIYNKLMKEAQKALVQGTHGLNLSGNILQQGAILANEL---IKKEDQKCRWEILSD 335
+ + + LV+G S ++L ++LA EL + ++ +W +LS
Sbjct: 682 KRASETVLLVSNDIEPILVKGDR----SKSVLFDASMLAKELQNLKESSNEDGKWRVLSK 737
Query: 336 VWVHLLVHIAPSSDAAALAEDLKSGVEFVTVIWALFCHCGI 376
VWV LL + A A L G E + +W L H G+
Sbjct: 738 VWVELLCYAASHCKATEHVAQLSRGGELLNFVWLLMAHFGL 778
>AT4G19080.1 | chr4:10448813-10449796 REVERSE LENGTH=328
Length = 327
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 36/206 (17%)
Query: 186 ILVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTGELQKAYTVSNCLSWYCMYL 245
ILVWH+AT L H+ + +R K Y S +S Y MYL
Sbjct: 117 ILVWHVATELL-------HQTEVDNAAR------------NVRSKEY--SKTISDYMMYL 155
Query: 246 LASKPKLLPETILMSKKAFQDAVQCAHEMLSDCHSWQSIYNKLMKEAQKA---------- 295
L ++ L+ + K F+DA+ A +Q ++ + ++A+KA
Sbjct: 156 LVAQSSLMSTVAGIDKIKFKDAIAEAKNSKEAKKLFQKMHVEGSRDAKKACAAIVDSFTE 215
Query: 296 --LVQGTHGLNLSGNILQQGAILANELIKKEDQK---CRWEILSDVWVHLLVHIAPSSDA 350
L G S ++L Q ++LA EL+ +++ W+++S VWV +L + A D+
Sbjct: 216 FELGNGNARRYQSKSMLFQASMLAKELLHITNERGNDAMWKVVSKVWVEMLCYAATHCDS 275
Query: 351 AALAEDLKSGVEFVTVIWALFCHCGI 376
A L G E + +W L H G+
Sbjct: 276 KQHAAQLNKGGELINFVWLLMAHFGL 301
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.130 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,280,538
Number of extensions: 360440
Number of successful extensions: 1116
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 6
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)