BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0616100 Os11g0616100|Os11g0616100
         (271 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21110.1  | chr2:9050290-9050850 REVERSE LENGTH=187             54   1e-07

>AT2G21110.1 | chr2:9050290-9050850 REVERSE LENGTH=187
          Length = 186

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 27/150 (18%)

Query: 8   AQTTSSTHKHL---NLDLFLHQAYSGPNKNQQVLIKP----GGNYLQPGGNYLQFGVLAV 60
           ++T   T K L   NL  F H   + PN +  ++ KP    G N   P      FG L  
Sbjct: 24  SETRPITPKQLVVTNLHFFFHDTLTAPNPSAILIAKPTHTRGDNDSSPS----PFGSLFA 79

Query: 61  HDWPLYDDEDQSKGKLVARARG------HHMQTVQEMVDQWFTTGQIVFVDGSEFVGSTL 114
            D PL    D  K + +  ARG       H+ T+   VD  FT+G+        F GS++
Sbjct: 80  LDDPLTVGPDP-KSEKIGNARGMYVSSGKHVPTLTMYVDFGFTSGK--------FNGSSI 130

Query: 115 LVAGTYTTGQK-GEWAIVGGTGKFSLAQGV 143
            V    T  +K  E A+VGG G+F +A+GV
Sbjct: 131 AVFSRNTITEKEREVAVVGGRGRFRMARGV 160



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,044,474
Number of extensions: 262359
Number of successful extensions: 1219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1293
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)