BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0615000 Os11g0615000|AK062893
(215 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42870.1 | chr5:17185719-17189681 REVERSE LENGTH=931 385 e-108
AT3G09560.2 | chr3:2934953-2938673 REVERSE LENGTH=905 358 e-100
>AT5G42870.1 | chr5:17185719-17189681 REVERSE LENGTH=931
Length = 930
Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust.
Identities = 176/213 (82%), Positives = 196/213 (92%), Gaps = 1/213 (0%)
Query: 1 DAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGVDWSQNGVAHLFSAIKENGYQLLF 60
DA IYLWKWN+RIV+SDVDGTIT+SDVLGQFMPLVG+DWSQ GV HLFSA+KENGYQL+F
Sbjct: 718 DARIYLWKWNSRIVVSDVDGTITRSDVLGQFMPLVGIDWSQTGVTHLFSAVKENGYQLIF 777
Query: 61 LSARAISQAHLTRQFLFNLKQDGKALPDGPVVISPDGLFPSLYREVIRRAPHEFKISCLG 120
LSARAISQA +TRQFL NLKQDGKALPDGPVVISPDGLFPSL+REVIRRAPHEFKI+CL
Sbjct: 778 LSARAISQASVTRQFLVNLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 837
Query: 121 AIKALFPPDSNPFYAGFGNRDTDELSYLKVGIPMGKIFIINPKGEVAVNRRVDTKSYTSL 180
I+ LFPP+ NPFYAGFGNRDTDE+SYLKVGIP GKIFIINPKGEVAVNRR+DT+SYT+L
Sbjct: 838 EIRGLFPPEHNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVAVNRRIDTRSYTNL 897
Query: 181 HALVNGMFPPISTSSEQEDYNTWNYWKMPLPAV 213
H LVN MFP S SSE ED+NTWN+WK+P P++
Sbjct: 898 HTLVNRMFPATS-SSEPEDFNTWNFWKLPPPSL 929
>AT3G09560.2 | chr3:2934953-2938673 REVERSE LENGTH=905
Length = 904
Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/215 (78%), Positives = 185/215 (86%), Gaps = 2/215 (0%)
Query: 1 DAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGVDWSQNGVAHLFSAIKENGYQLLF 60
DAHIY W+W+ +IVISDVDGTITKSDVLGQFMP +G DW+Q+GVA LFSAIKENGYQLLF
Sbjct: 691 DAHIYRWRWDTKIVISDVDGTITKSDVLGQFMPFIGKDWTQSGVAKLFSAIKENGYQLLF 750
Query: 61 LSARAISQAHLTRQFLFNLKQDGKALPDGPVVISPDGLFPSLYREVIRRAPHEFKISCLG 120
LSARAI QA+LTR FL NLKQDGKALP GPVVISPDGLFP+LYREVIRRAPHEFKI+CL
Sbjct: 751 LSARAIVQAYLTRNFLNNLKQDGKALPTGPVVISPDGLFPALYREVIRRAPHEFKIACLE 810
Query: 121 AIKALFPPDSNPFYAGFGNRDTDELSYLKVGIPMGKIFIINPKGEVAVNRRVDT-KSYTS 179
I+ LFP D NPFYAGFGNRDTDELSY K+GIP GKIFIINPKGEVA R+D KSYTS
Sbjct: 811 DIRKLFPTDYNPFYAGFGNRDTDELSYRKLGIPKGKIFIINPKGEVATGHRIDVKKSYTS 870
Query: 180 LHALVNGMFPPISTSSEQEDYNTWNYWKMPLPAVD 214
LH LVN MFPP S EQEDYN WN+WK+P+ V+
Sbjct: 871 LHTLVNDMFPPTSL-VEQEDYNPWNFWKLPIEEVE 904
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,225,523
Number of extensions: 224877
Number of successful extensions: 415
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)