BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0614500 Os11g0614500|AK067827
(78 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37050.1 | chr4:17457261-17459642 REVERSE LENGTH=429 74 1e-14
AT4G37070.2 | chr4:17464916-17467058 REVERSE LENGTH=415 63 4e-11
AT2G26560.1 | chr2:11293912-11295708 REVERSE LENGTH=408 62 6e-11
AT4G37060.2 | chr4:17461573-17463704 REVERSE LENGTH=436 59 5e-10
>AT4G37050.1 | chr4:17457261-17459642 REVERSE LENGTH=429
Length = 428
Score = 74.3 bits (181), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
DDSL G SVDI+TE+NME L+ +G+ LLKK V+RVN+++G ++P+ TNEEAL RF
Sbjct: 349 DDSLKGDLGSVDISTEKNMEGLVEVGEALLKKRVSRVNLESGHYQPISENVTNEEALKRF 408
Query: 61 AK 62
AK
Sbjct: 409 AK 410
>AT4G37070.2 | chr4:17464916-17467058 REVERSE LENGTH=415
Length = 414
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
DD+L G S++D+AT+ N+E L IG+ +L V ++NIDTGV+EPV TN+E L R+
Sbjct: 325 DDTLEGDVSTMDLATKSNLENLQKIGEKMLTNRVMQMNIDTGVYEPVAENITNDEQLKRY 384
Query: 61 AK 62
AK
Sbjct: 385 AK 386
>AT2G26560.1 | chr2:11293912-11295708 REVERSE LENGTH=408
Length = 407
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
DD+L G +SVDIAT EN++ L G +LLKKPVARVN+D+G +E E TNE AL +
Sbjct: 325 DDTLTGDAASVDIATVENLDILAKTGDELLKKPVARVNLDSGCNENA-YETTNEHALIKL 383
Query: 61 A 61
A
Sbjct: 384 A 384
>AT4G37060.2 | chr4:17461573-17463704 REVERSE LENGTH=436
Length = 435
Score = 58.9 bits (141), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
DD+L G S++D++T+ N+E LI +G+ +L V ++NIDTG +EP N+E L RF
Sbjct: 346 DDTLEGDASTLDLSTKSNLENLIKLGEKMLTNRVMQMNIDTGTYEPAAENINNDEQLKRF 405
Query: 61 AK 62
AK
Sbjct: 406 AK 407
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,321,015
Number of extensions: 43414
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 4
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)