BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0609900 Os11g0609900|Os11g0609900
         (258 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77680.1  | chr1:29192188-29195963 REVERSE LENGTH=1056         108   2e-24

>AT1G77680.1 | chr1:29192188-29195963 REVERSE LENGTH=1056
          Length = 1055

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 78/113 (69%)

Query: 130 KDAAESKERSEALSAAAKKFKLPSSENLGEIAEHCNERKCAGHCAEEAGQKLYMWTLIKR 189
           KDAAES E  EALS AA K  +PS+E L ++A +CNERK A     +A  KLY W ++K+
Sbjct: 851 KDAAESIEGKEALSVAALKHGVPSTEILSDVAAYCNERKLAARKVRDACDKLYTWFVLKQ 910

Query: 190 KELLVADAIVLGLRTKFMYVYVPKLTMERRIHYDEVESLSIECLEATGMLVLE 242
           KE+   +A V+ L ++FM VY+ KL +ERRI+YD++E L  + LEAT  L+++
Sbjct: 911 KEIFPCEARVMNLGSRFMTVYISKLGIERRIYYDQIEGLCADWLEATSTLIVD 963



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,646,728
Number of extensions: 156906
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)