BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0602600 Os11g0602600|AK072671
(195 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39850.1 | chr5:15950053-15951171 FORWARD LENGTH=198 337 2e-93
AT5G15200.1 | chr5:4935124-4936334 REVERSE LENGTH=199 328 9e-91
>AT5G39850.1 | chr5:15950053-15951171 FORWARD LENGTH=198
Length = 197
Score = 337 bits (864), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/187 (88%), Positives = 175/187 (93%), Gaps = 4/187 (2%)
Query: 1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH 60
MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 120
LLTLDEKNPRRIFEGEALLRRMNRYGLL + QNKLDYVLALTVENFL RRLQT+VFK+GM
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 121 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQ- 179
AKSIHHARVLIRQRHIRVGRQ+VNIPSFMVRVES+KH+DFSLTSPFGGG PGRVKR+N+
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180
Query: 180 ---KKAS 183
KKAS
Sbjct: 181 AGAKKAS 187
>AT5G15200.1 | chr5:4935124-4936334 REVERSE LENGTH=199
Length = 198
Score = 328 bits (842), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 157/183 (85%), Positives = 173/183 (94%)
Query: 1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH 60
MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR
Sbjct: 1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60
Query: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 120
LLTLDEK+PRRIFEGEALLRRMNRYGLL + QNKLDYVLALTVENFL RRLQT+VFK+GM
Sbjct: 61 LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 121 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 180
AKSIHH+RVLIRQRHIRVG+Q+VNIPSFMVR++S+KHIDF+LTSPFGGG PGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180
Query: 181 KAS 183
AS
Sbjct: 181 SAS 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,972,305
Number of extensions: 151109
Number of successful extensions: 431
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)