BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0600900 Os11g0600900|AK110698
(227 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67070.1 | chr1:25042324-25044412 FORWARD LENGTH=442 286 7e-78
AT3G02570.1 | chr3:543463-545478 REVERSE LENGTH=433 285 1e-77
>AT1G67070.1 | chr1:25042324-25044412 FORWARD LENGTH=442
Length = 441
Score = 286 bits (732), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 136/222 (61%), Positives = 169/222 (76%), Gaps = 3/222 (1%)
Query: 5 FTNLMTASKETVSEAVSKLKSRLNIESKVRTLTKKEQLVLSLEMQYPEDVGVLAAFFFNY 64
FT LM+AS + VS++K+RL +E+K R L++KE+LVL LE QY D+GV++AFFFNY
Sbjct: 220 FTQLMSASNNETKQVVSRMKNRLLLETKHRELSEKEKLVLELEKQYTGDIGVISAFFFNY 279
Query: 65 VKLNPGEALYIGANEPHAYLSGECVECMATSDNVVRAGLTPKYRDVQTLCSMLTYKQNYP 124
VKLNPGEALY+ ANEPHAY+SG+CVECMA SDNVVRAGLTPK+RDVQTLCSMLTYK YP
Sbjct: 280 VKLNPGEALYLDANEPHAYISGDCVECMAASDNVVRAGLTPKHRDVQTLCSMLTYKLGYP 339
Query: 125 EILRGVPVQAYVTRYIPPSEEFEVDRCLLPSGESVTMSPVPGPSIFLVMTGEGKIEADSM 184
EIL+G P+ YVTRY+PP +EFEVD C LP G+S VPGPS++LV+ G+G++ S
Sbjct: 340 EILKGFPLTPYVTRYLPPFDEFEVDHCDLPRGKSTVFPAVPGPSVYLVIEGKGQLRTGS- 398
Query: 185 LDEGKAKEGDVFFVPAHTEVRILASGPGSMQLYRAGVNSRFF 226
+ GDV FVPA E+ + M+LYRAGV+SRFF
Sbjct: 399 -SKVLVNRGDVLFVPADIEIHVTGES-DVMKLYRAGVSSRFF 438
>AT3G02570.1 | chr3:543463-545478 REVERSE LENGTH=433
Length = 432
Score = 285 bits (729), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/226 (61%), Positives = 172/226 (76%), Gaps = 4/226 (1%)
Query: 1 LQSAFTNLMTASKETVSEAVSKLKSRLNIESKVRTLTKKEQLVLSLEMQYPEDVGVLAAF 60
+++ FT LM+A +T + VSKLK RL++ES+ R LT KE+LVL LE QYP D+GV++AF
Sbjct: 208 VRTIFTLLMSADADTTKKIVSKLKRRLHMESQERQLTDKERLVLKLEKQYPNDIGVISAF 267
Query: 61 FFNYVKLNPGEALYIGANEPHAYLSGECVECMATSDNVVRAGLTPKYRDVQTLCSMLTYK 120
FFNYVKLNPGEALY+GANEPHAYL GEC+E MATSDNVVRAGLT K D+QTLCSML+YK
Sbjct: 268 FFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNVVRAGLTSKPLDIQTLCSMLSYK 327
Query: 121 QNYPEILRGVPVQAYVTRYIPPSEEFEVDRCLLPSGESVTMSPVPGPSIFLVMTGEGKIE 180
YPEIL+G ++ Y+TRY+PP EEFEVD C LPSG S VPGPS+ LV+ GEG++
Sbjct: 328 LGYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGASTVFPSVPGPSLLLVLQGEGRMS 387
Query: 181 ADSMLDEGKAKEGDVFFVPAHTEVRILASGPGSMQLYRAGVNSRFF 226
++ D GDV FVPA TE+ + +S ++LYRAG+NSRF
Sbjct: 388 TEASAD--GISMGDVLFVPADTEIHLRSS--SDLKLYRAGINSRFL 429
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,704,926
Number of extensions: 199516
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,502,049
Effective search space: 1122270468
Effective search space used: 1122270468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)