BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0599400 Os11g0599400|J090078C01
(270 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375 102 2e-22
AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325 97 6e-21
AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149 82 4e-16
AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297 81 7e-16
>AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375
Length = 374
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 8/196 (4%)
Query: 52 GIQWVMRLMDRP-RYFYKMFRMSPEIFHALHDLLVXXXXXXXXXXXXXXXXLAMFLWIVG 110
G ++V ++++ P ++ FRM +F+ L DLL LA+FL+I+G
Sbjct: 27 GNKFVYQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIG 86
Query: 111 GPQSFSQVESHFTRSLWTVHTKFHEVLKCLRKLAKDNITPRDPTFSMEHGRLREDRFWPY 170
V+ F S T+ F+ VL + ++KD P + ++E+ PY
Sbjct: 87 HNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDD-------PY 139
Query: 171 FKDAIGAIDGSHISVVVLLDETISHTCHHGYTSQNVLAIYNFDMRFIFAVAGWPGSAHDS 230
FKD +G +D HI V+V +DE +G +QNVLA +FD+RF + +AGW GSA D
Sbjct: 140 FKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQ 199
Query: 231 RILSHALANFPSFPMP 246
++L+ AL +P
Sbjct: 200 QVLNAALTRRNKLQVP 215
>AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325
Length = 324
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 100/219 (45%), Gaps = 7/219 (3%)
Query: 35 YTERYLQKGAYRQTPETGIQWV---MRLMDRPRYFYKMFRMSPEIFHALHDLLVXXXXXX 91
Y +RY Q+ + + G+ W RL ++ RMS F L ++L
Sbjct: 34 YYDRYFQRAPVQ--IDRGLGWRNIWRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQ 91
Query: 92 XXXXXXXXXXLAMFLWIVGGPQSFSQVESHFTRSLWTVHTKFHEVLKCLRKLAKDNI-TP 150
+AMFL I G + + V F R+ TV KF EVL LA D I TP
Sbjct: 92 PTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTP 151
Query: 151 RDPTFSMEHGRLRED-RFWPYFKDAIGAIDGSHISVVVLLDETISHTCHHGYTSQNVLAI 209
RL+ D R+WPYF +GA+DG+H+ V V D + H S N++AI
Sbjct: 152 TRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAI 211
Query: 210 YNFDMRFIFAVAGWPGSAHDSRILSHALANFPSFPMPPT 248
+ M F + G PGS +D+ +L A + FP+PP+
Sbjct: 212 CDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPS 250
>AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149
Length = 148
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 161 RLRED-RFWPYFKDAIGAIDGSHISVVVLLDETISHTCHHGYTSQNVLAIYNFDMRFIFA 219
++RE R +PYFKD +GAID +HI +V + S G SQN+LA NFD+ F++
Sbjct: 11 KIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYV 70
Query: 220 VAGWPGSAHDSRILSHALA-NFPSFPMP 246
++GW GSAHDS++L+ AL N P+P
Sbjct: 71 LSGWEGSAHDSKVLNDALTRNSNRLPVP 98
>AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297
Length = 296
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 69 MFRMSPEIFHALHDLLVXXXXXXXXXXXXXXXXLAMFLWIVGGPQSFSQVESHFTRSLWT 128
+ RMS E F L ++L +A+FL I + + F + T
Sbjct: 27 LIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQET 86
Query: 129 VHTKFHEVLKCLRKLAKDNITPRD-PTFSMEHGRLRED-RFWPYFKDAIGAIDGSHISVV 186
+ KFH+VLK + +LA + I PR RL++D R+WP+ D +G
Sbjct: 87 IWRKFHDVLKAMERLAVEYIRPRKVEELRAISNRLQDDTRYWPFLMDLLGI--------- 137
Query: 187 VLLDETISHTCHHGYTSQNVLAIYNFDMRFIFAVAGWPGSAHDSRILSHALANFPSFPMP 246
S NVLAI + DM F + G GS HD+R+LS A+++ P F +P
Sbjct: 138 ---------------ASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVP 182
Query: 247 P 247
P
Sbjct: 183 P 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,658,115
Number of extensions: 210790
Number of successful extensions: 560
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 4
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)