BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0598900 Os11g0598900|Os11g0598900
(978 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47910.2 | chr3:17674737-17681444 REVERSE LENGTH=1608 67 7e-11
AT3G47890.1 | chr3:17667172-17673530 REVERSE LENGTH=1569 60 5e-09
AT2G27650.1 | chr2:11792996-11797343 REVERSE LENGTH=1107 54 3e-07
AT5G61940.1 | chr5:24868155-24872717 FORWARD LENGTH=1095 54 3e-07
AT5G61950.1 | chr5:24873566-24878093 FORWARD LENGTH=1133 54 4e-07
AT5G51530.1 | chr5:20927118-20931502 REVERSE LENGTH=1150 52 2e-06
AT1G65110.1 | chr1:24183959-24188330 REVERSE LENGTH=1095 51 4e-06
>AT3G47910.2 | chr3:17674737-17681444 REVERSE LENGTH=1608
Length = 1607
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 862 ECQSCGNLKSVGHFLLNTPHFFTVVLKCTDSSKSHVSLSELLVGCTSPPDITL------- 914
E CG L + H L PH FT VL ++ ++ ++ L + DI++
Sbjct: 1483 ETGGCGKLNHIHHILTTPPHVFTTVLGWQNTCETVEDIAATLAALNTEIDISIMYRGLDP 1542
Query: 915 ATKYTLASMICCSDGQYVCI--SRDQNKWLIYDTKTIEAEDSWERLVQRFTDSELIPEVI 972
+ Y+L S++C Y C SR+ ++W++YD KT++ SW ++ L P+V+
Sbjct: 1543 KSTYSLVSVVCYYGQHYHCFAHSREHDQWIMYDDKTVKVIGSWIDVLSMCERGHLQPQVL 1602
Query: 973 IFE 975
++E
Sbjct: 1603 LYE 1605
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 348 YWNSMTQEQRGEFLSVRFDELQEDY--NKVDRSSFTMSDVLRFGEKHNSYRFWVCPLCGS 405
YW+S+++E + EFL V+F +L+ + +K ++ +S+ L F E + ++RFW C C
Sbjct: 333 YWDSLSKEMKKEFLRVKFSDLKSHFSGSKDGQAYEIVSEALSFCEANKTWRFWACCRC-- 390
Query: 406 GSSSKKHTDTVSLLSHMCSKHQRAVLPRLRSVLDQELD 443
S+ ++ + + H+ H VLP+++ VL Q +D
Sbjct: 391 ---SQNFIESEAHMHHIVQAHMGNVLPKMQMVLPQIVD 425
>AT3G47890.1 | chr3:17667172-17673530 REVERSE LENGTH=1569
Length = 1568
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 862 ECQSCGNLKSVGHFLLNTPHFFTVVLKCTDSSKSHVSLSELLVGCTSPPDITLATK---- 917
E CG + H L PH FT+VL ++ ++ ++ L + DI++ +
Sbjct: 1443 EAGGCGKRNHIHHILTTPPHVFTIVLGWQNTCETVEDIAATLAALNTEIDISIMYRGVDP 1502
Query: 918 ---YTLASMICCSDGQYVCI--SRDQNKWLIYDTKTIEAEDSWERLVQRFTDSELIPEVI 972
Y+L S++C Y C S + ++W++YD + ++ SW ++ L P+V+
Sbjct: 1503 KNTYSLVSVVCYYGQHYHCFAYSHEHDQWIMYDDQNVKVIGSWSDVLSMCKRGHLQPQVL 1562
Query: 973 IFE 975
++E
Sbjct: 1563 LYE 1565
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 348 YWNSMTQEQRGEFLSVRFDELQEDYN--KVDRSSFTMSDVLRFGEKHNSYRFWVCPLCGS 405
YW+SM++E + + L V+ +L+ ++ K + +S+ L F E + ++RFWVC C
Sbjct: 290 YWDSMSKEMKKQLLRVKLSDLKSHFSASKDGNENEIISEALSFCEANKTWRFWVCCQC-- 347
Query: 406 GSSSKKHTDTVSLLSHMCSKHQRAVLPRLRSVLDQELD 443
S+K + + + H+ H VLP+++ VL Q D
Sbjct: 348 ---SEKFIKSEAYMHHIVQVHMGNVLPKMQMVLPQSFD 382
>AT2G27650.1 | chr2:11792996-11797343 REVERSE LENGTH=1107
Length = 1106
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 866 CGNLKSVGHFLLNTPHFFTVVLKCTDSSKSHVSLSELLVGCTSPPDITL-------ATKY 918
CG + H + P FT+VL+ + S++ +SE DI+ T Y
Sbjct: 982 CGIANFIHHIISKCPPIFTIVLE-WEKSETEKEISETTKAFEWEIDISRLYAGLEPKTNY 1040
Query: 919 TLASMICCSDGQ-YVCISRDQNKWLIYDTKTIEAED--SWERLVQRFTDSELIPEVIIFE 975
LASM+ C + Q ++CI+ ++N+W+ + ED +W+ +V+ + ++ PE++ +E
Sbjct: 1041 RLASMVGCDEKQEHICIAYEKNRWVNLRRDALAGEDVGNWKSVVRFCGERKVRPEILFYE 1100
Query: 976 VIK 978
V++
Sbjct: 1101 VVR 1103
>AT5G61940.1 | chr5:24868155-24872717 FORWARD LENGTH=1095
Length = 1094
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 19/151 (12%)
Query: 843 KSFADLPVAIDERFW------YLQDECQSCGNLKSVGHFLLNTPHFFTVVLKCTDSSKSH 896
+S D ++ + W Y Q + CG SV H P FT+VL+ +S+ +
Sbjct: 943 ESLKDYKLSTAKLLWHCYGSRYNQRTEEGCGKTNSVQHISSRCPPIFTIVLEWENSATEN 1002
Query: 897 VSLSELLVGCTSPPDIT------LA--TKYTLASMICCSDG--QYVCISRDQNKWLIYDT 946
+SE DI+ LA TKY L SM+ S+G +++C++ ++N+W+
Sbjct: 1003 -EISETTKAFDWEIDISRLYEEGLAPNTKYRLVSMVGYSEGDEEHICLAYEENRWVNLRR 1061
Query: 947 KTIEAED--SWERLVQRFTDSELIPEVIIFE 975
+ I ED W+ +V+ + ++ PE++++E
Sbjct: 1062 ECIAGEDVGDWKNVVRFCGERKVRPEILLYE 1092
>AT5G61950.1 | chr5:24873566-24878093 FORWARD LENGTH=1133
Length = 1132
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 866 CGNLKSVGHFLLNTPHFFTVVLKCTDSSKSHVSLSELLVGCTSPPDIT--------LATK 917
CG V H + P FT+VL+ + S++ +SE DI+ T
Sbjct: 1006 CGKKSYVDHIIRRCPPIFTIVLE-WEKSETEKEISETTKALDWEIDISRLYEEGLETNTN 1064
Query: 918 YTLASMICCSDG--QYVCISRDQNKWLIYDTKTIEAED--SWERLVQRFTDSELIPEVII 973
Y L SM+ C +G ++VC++ ++N+W+ + ED W+ +V+ + ++ PE++I
Sbjct: 1065 YRLVSMVGCGEGEEEHVCLAYEKNRWVNLRRECFAGEDVGDWKNVVRFCGERKVRPEILI 1124
Query: 974 FEVIK 978
+E ++
Sbjct: 1125 YESVR 1129
>AT5G51530.1 | chr5:20927118-20931502 REVERSE LENGTH=1150
Length = 1149
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 866 CGNLKSVGHFLLNTPHFFTVVLKCTDSSKSHVSLSELLVGCTSPPDITLA-------TKY 918
CG V H + P FT+VL+ + S++ +SE DI+ T Y
Sbjct: 1024 CGRTNIVHHIISRCPPIFTIVLE-WEKSETEKEISETTKALEWEIDISRLYEGLEPNTNY 1082
Query: 919 TLASMICCS--DGQYVCISRDQNKWLIYDTKTIEAED--SWERLVQRFTDSELIPEVIIF 974
L SM+ CS + +++CI+ ++N+W+ +++ ED +W+ +V+ + ++ PE++ +
Sbjct: 1083 RLVSMVGCSEVEEEHICIAYEKNRWVNLKRESLVGEDIGNWKSVVRFCGEKKVRPEILFY 1142
Query: 975 E 975
E
Sbjct: 1143 E 1143
>AT1G65110.1 | chr1:24183959-24188330 REVERSE LENGTH=1095
Length = 1094
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 866 CGNLKSVGHFLLNTPHFFTVVLKCTDSSKSHVSLSELLVGCTSPPDITLA--------TK 917
CG++ V H + P FT+VL+ +++ +SE DI+ K
Sbjct: 951 CGDINFVHHTISRCPPIFTIVLEWV-KNETEKDISETTKALDWEIDISRVYEGLEESNIK 1009
Query: 918 YTLASMI-CCSDGQYVCISRDQNKW--LIYDTKTIEAEDSWERLVQRFTDSELIPEVIIF 974
Y L SMI C +G+Y+C++ +N+W L ++ E +W +V+ + ++ PE++ +
Sbjct: 1010 YRLVSMIGCVVEGEYICMAYKKNRWVSLRHEALAEEVVGNWNNVVRFCGERKVRPEILFY 1069
Query: 975 EVIK 978
E +
Sbjct: 1070 EAFQ 1073
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,744,777
Number of extensions: 869148
Number of successful extensions: 2300
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2299
Number of HSP's successfully gapped: 12
Length of query: 978
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 870
Effective length of database: 8,145,641
Effective search space: 7086707670
Effective search space used: 7086707670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)