BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0598000 Os11g0598000|Os11g0598000
(326 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G03560.1 | chr2:1079639-1081376 FORWARD LENGTH=454 57 2e-08
AT5G25290.1 | chr5:8778592-8779785 FORWARD LENGTH=398 55 5e-08
AT4G22165.1 | chr4:11734328-11735419 FORWARD LENGTH=364 55 7e-08
AT4G22180.1 | chr4:11738574-11739782 FORWARD LENGTH=403 54 1e-07
AT1G57790.1 | chr1:21404578-21405636 REVERSE LENGTH=353 53 2e-07
AT3G07870.1 | chr3:2510871-2512124 FORWARD LENGTH=418 52 3e-07
AT2G33190.1 | chr2:14067972-14069111 FORWARD LENGTH=380 51 9e-07
AT1G49360.1 | chr1:18267338-18269423 REVERSE LENGTH=482 48 7e-06
>AT2G03560.1 | chr2:1079639-1081376 FORWARD LENGTH=454
Length = 453
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 6 DILMSIFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFESDSTKATGL 65
DIL I +L LD RA VC+ W S + + +P + ++Y + + + L
Sbjct: 28 DILRKIIESLSSLDFYRAKIVCSDWYSVWKTCVK----RPLRPWRIIYRAKYYISTSLML 83
Query: 66 YSLAEKKAY--MLTLLDPALPSRFIIGSSHGWIITADERSELHLVNPITGKQIALPPVTT 123
+ E K Y ++ + D + + + SS W++ AD R + ++VN +TGK+I LPP+ +
Sbjct: 84 FDPDEDKIYKNLVGVSDES----YRLASSGNWLLMADSRLDFYIVNLLTGKRINLPPMES 139
Query: 124 IEQLSIARSGDDKWTWLPPHKDYEDC 149
+ + AR K+ + + +++C
Sbjct: 140 KIRGAQARFVQSKYFYKSRYICFDNC 165
>AT5G25290.1 | chr5:8778592-8779785 FORWARD LENGTH=398
Length = 397
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 2 ELPQDILMSIFSTLEILDLIRAGSVCNSWRSAYTSICS-LGHCKPQQTP-CLLYTFESDS 59
E+P DIL S+F L +DL RA VC+ W S CS + ++P +L++ + D
Sbjct: 16 EIPMDILRSVFERLSFVDLHRAKIVCSHWYS-----CSKQSFLRKTRSPLVILFSDDGDC 70
Query: 60 TKATGLYSLAEKKAYMLTLLDPALPSRFIIGSSHGWIITADERSELHLVNPITGKQIALP 119
T LY+ E + Y L + +S W + D RS L++++ + K+I LP
Sbjct: 71 T----LYNPEEARVYKSK---RDLSRYRFLANSGNWFLVLDPRSNLYIIDLFSEKKINLP 123
Query: 120 PVTTIE--QLSIARSGDDKWTWL 140
P+ + + + ++ + G K+ L
Sbjct: 124 PLDSFKGYKYNLKKVGARKFKEL 146
>AT4G22165.1 | chr4:11734328-11735419 FORWARD LENGTH=364
Length = 363
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 57/221 (25%)
Query: 2 ELPQDILMSIFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTF--ESDS 59
ELP D+L +F L +++ RA SVC++ S C P++ LL F E ++
Sbjct: 12 ELPLDLLNLVFKRLSLVNFQRAKSVCSTRYSVSR------QCVPERQIALLILFPKEDNT 65
Query: 60 TKAT-GLYSLAEK-KAYMLTLLDPALPSRFIIGSSHGWIITADERSELHLVNPITGKQIA 117
+T L++ EK K Y + L + W++ D + L+++N T K+I
Sbjct: 66 DNSTCKLFNPDEKDKLYKMQDLGVEFAKSVCRATYGSWLLMQDSKYHLYILNIFTRKRIN 125
Query: 118 LPPVTT------IEQ-----------------------------------------LSIA 130
LPPV + IE+ + A
Sbjct: 126 LPPVESQLGMVKIERTIYDWFHFSHGHYSFSLSSPVFWIDEESKDYIVMWGLGVYCVVYA 185
Query: 131 RSGDDKWTWLPPHKDYEDCIFRDGLLYALTSEGEIYEYDLS 171
+ GD W +P + D +++D LY L+S G D S
Sbjct: 186 KKGDTSWNQIPQTSYFYDMVYKDHKLYFLSSTGTFQILDFS 226
>AT4G22180.1 | chr4:11738574-11739782 FORWARD LENGTH=403
Length = 402
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 2 ELPQDILMSIFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFESDSTK 61
ELP D+L ++F L + RA SVC+SW S P Q P L+ E D+
Sbjct: 23 ELPLDLLTAVFERLSYANFQRAKSVCSSWHSGSRQSV------PIQIPWLILFPEYDNNN 76
Query: 62 ATGLYSLAEK-KAYMLTLLDPALPSRFIIGSSHGWIITADERSELHLVNPITGKQIALPP 120
+ L++ EK + Y + L + W++ D L+++N T +++ LPP
Sbjct: 77 SCTLFNPEEKGQVYKMKDLGVEFSKSVCTATYGSWLLMRDPLYNLYILNLFTHERVNLPP 136
Query: 121 VTTIEQLSIARSGDDKWTWL 140
+ QL + + + W
Sbjct: 137 FES--QLGMVKIERTIYDWF 154
>AT1G57790.1 | chr1:21404578-21405636 REVERSE LENGTH=353
Length = 352
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 2 ELPQDILMSIFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFESDSTK 61
+LP ++L S+ + LEI D +RA VC SW A S+ + ++P L+Y E+ +T
Sbjct: 15 DLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVRVI-----DKSPWLMYFPETKNT- 68
Query: 62 ATGLYSLAEKKAYMLTLLDPALPSRFIIG-SSHGWIITADE-RSELHLVNPITGKQIALP 119
Y + K Y + L P FI+ S GW++ + E S L NP T +ALP
Sbjct: 69 -YDFYDPSNCKKYTMEL--PKSLVGFIVRYSKDGWLLMSQEDSSHFVLFNPFTMDVVALP 125
>AT3G07870.1 | chr3:2510871-2512124 FORWARD LENGTH=418
Length = 417
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 3 LPQDILMSIFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQT-PCLLYTFESDSTK 61
LP+DI+ IFS L I + R VC SWRS T L T PCLL +S
Sbjct: 28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPIRN 87
Query: 62 ATGLYSLAEKKAYMLT-----LLDPALPSRFIIGSSHGWIITADE--RSELHLVNPITGK 114
L+E++ + T ++P ++GS +G + +D L+L NP T
Sbjct: 88 GLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLYNPFTTN 147
Query: 115 QIALP 119
+ LP
Sbjct: 148 SLELP 152
>AT2G33190.1 | chr2:14067972-14069111 FORWARD LENGTH=380
Length = 379
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 2 ELPQDILMSIFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFE-SDST 60
+L D+L SIF +L LD RAG+VC++W + S C LY +
Sbjct: 10 KLYPDLLRSIFESLSCLDFHRAGTVCSNWYAVSRS-------------CPLYPWRIVFRG 56
Query: 61 KATGLYSLAEKKAYMLTLLDPALPSRFIIGSSHGWIITADERSELHLVNPITGKQIALPP 120
K + L+ + K Y LL L + S WI+ D R + +L+N T + I LP
Sbjct: 57 KNSVLFDPIQDKIYTKNLLGIDLSKIHCLASYGNWILIVDPRLDFYLLNVFTRETINLPS 116
Query: 121 VTT 123
+ +
Sbjct: 117 LES 119
>AT1G49360.1 | chr1:18267338-18269423 REVERSE LENGTH=482
Length = 481
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 3 LPQDILMSIFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFESDSTKA 62
LP D++ I S L D IR+ +VC +W S+ K ++ L + D +
Sbjct: 111 LPSDLVRLILSRLSFKDNIRSSTVCKAWGDIAASV----RVKSRRCWLLYHDAFQDKGVS 166
Query: 63 TGLYSLAEKKAYMLTLLDPALPSRFIIGSSHGWIITADERS---ELHLVNPITGKQIALP 119
G + EKK L S I+ S GW++ D S +++ NP T ++I LP
Sbjct: 167 YGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRERIDLP 226
Query: 120 PVTTIEQL 127
+E +
Sbjct: 227 RNRIMESV 234
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,295,912
Number of extensions: 289792
Number of successful extensions: 969
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 9
Length of query: 326
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,392,385
Effective search space: 1905071395
Effective search space used: 1905071395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)