BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0594800 Os11g0594800|J043016C12
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 122 7e-29
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 119 4e-28
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 117 2e-27
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 111 1e-25
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 94 3e-20
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 84 2e-17
AT5G37070.1 | chr5:14651091-14652147 FORWARD LENGTH=171 53 4e-08
AT3G08890.1 | chr3:2706701-2707775 FORWARD LENGTH=171 49 6e-07
AT2G03350.1 | chr2:1019733-1021071 REVERSE LENGTH=180 46 6e-06
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Query: 1 MASQIIETN-RAGAEIINGDAAGKKKSIELLQELGLPKGLFPLDDIEEFGYNRANGFMWI 59
M+SQ +++ R GAEI NG++ K+K+ E+L + LPKGL PLD++ E G+N++ G++WI
Sbjct: 1 MSSQETKSDQREGAEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVWI 60
Query: 60 LHSKKKEHTFKKIKQTVSYATEVTAFVEKGKLKKIAGVKTKELMLWLXXXXXXXXXXXXX 119
K +H FK I + VSY +EVTA +E ++ ++ G+K+KE+++W+
Sbjct: 61 KIKNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDPT 120
Query: 120 KITFKTGTGLSDSFDASAFE 139
+ITF TGLS +F +AFE
Sbjct: 121 QITFANPTGLSRTFPVTAFE 140
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 5 IIETNRAGAEIINGDAAGKKKSIELLQELGLPKGLFPLDDIEEFGYNRANGFMWILHSKK 64
+ E RA AE+ GD ++K+ L+E+ +P GL PL DIEE GY+R +G +W+ K
Sbjct: 4 VTEEVRAKAEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKKS 63
Query: 65 KEHTFKKIKQTVSYATEVTAFVEKGKLKKIAGVKTKELMLWLXXXXXXXXXXXXXKITFK 124
H F +I + VSY TEVTA VE GK+KK+ GVK KEL++W+ KITFK
Sbjct: 64 ITHKFTEIDKLVSYGTEVTAIVETGKIKKLTGVKAKELLIWV-TINEIYTEEPPTKITFK 122
Query: 125 TGTGLSDSFDASAF 138
T T LS +F +AF
Sbjct: 123 TPTTLSRTFPVTAF 136
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Query: 10 RAGAEIINGDAAGKKKSIELLQELGLPKGLFPLDDIEEFGYNRANGFMWILHSKKKEHTF 69
RA AE GD ++K+ E L+E+ +P GL PL DIEE GY+R G +W+ K H F
Sbjct: 9 RARAEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKKSITHKF 68
Query: 70 KKIKQTVSYATEVTAFVEKGKLKKIAGVKTKELMLWLXXXXXXXXXXXXX-KITFKTGTG 128
+ I + VSYATEV A VE GK+KK+ GVK KEL++W+ KI F+T TG
Sbjct: 69 EAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKINFRTPTG 128
Query: 129 LSDSFDASAF 138
LS +F SAF
Sbjct: 129 LSRTFPVSAF 138
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 1 MASQ---IIETNRAGAEIINGDAAGKKKSIELLQELGLPKGLFPLDDIEEFGYNRANGFM 57
MAS+ ++ R GAEI+ G K+S+ELL+ELG PKG+ PL ++ E G RA G++
Sbjct: 1 MASEGVVVVGGEREGAEIVYGAEECYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYV 60
Query: 58 WILHSKKKEHTFKKIKQTVSYATEVTAFVEKGKLKKIAGVKTKELMLWLXXXXXXXXXXX 117
W+ EH F+ VSY EVTA+V+K +KK+ GVK+K++ LW+
Sbjct: 61 WMKQDTPYEHFFEATNTRVSYGLEVTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEPK 120
Query: 118 XXKITFKTGTGLSDSFDASAF 138
KI FKT G+ SF + F
Sbjct: 121 SKKIYFKTPMGIGRSFPVTGF 141
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 59/82 (71%)
Query: 25 KSIELLQELGLPKGLFPLDDIEEFGYNRANGFMWILHSKKKEHTFKKIKQTVSYATEVTA 84
K+ ELL + LP GL PL D+ E GYN+ GF+W+ K EHTF++I + V Y TE+TA
Sbjct: 26 KAKELLALIKLPTGLLPLKDMTEVGYNKTKGFVWMRMRSKIEHTFREIGRRVLYDTEITA 85
Query: 85 FVEKGKLKKIAGVKTKELMLWL 106
FVE +++++ GVK+KELM+W+
Sbjct: 86 FVEDRRMRRLTGVKSKELMIWV 107
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 5 IIETNRAGAEIINGDAAGKKKSIELLQELGLPKGLFPLDDIEEFGYNRANGFMWILHSKK 64
+ E +A AE+ +GD ++K LL E+GLP L +I+E GY + GF+W+ H +K
Sbjct: 2 VTEAMKAKAEVYHGDKTCREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKEK 61
Query: 65 KEHTFKKIKQ--------TVSYATEVTAFVEKGKLKKIAGVKTKELMLWLXXXXXXXXXX 116
K+ K+ Q V + EVTA+ E ++KK+ GVK KE M+W+
Sbjct: 62 KKEDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWISLGEIQVNRS 121
Query: 117 XXXKITFKTGTG-LSDSFDASAFE 139
ITFKT G LS S S FE
Sbjct: 122 SGL-ITFKTEVGLLSKSLPLSVFE 144
>AT5G37070.1 | chr5:14651091-14652147 FORWARD LENGTH=171
Length = 170
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 28 ELLQELGLPKGLFPLDDIEEFGYNRANGFMWILHSKKKEHTFKKIKQTVSYATEVTAFVE 87
ELL+E GLP G+FP D + +N G + + + E ++ + ++T VT ++E
Sbjct: 56 ELLKEFGLPVGIFP-QDATNYEFNEETGKLTVFIPETCEVGYRD-SSVLRFSTTVTGYLE 113
Query: 88 KGKLKKIAGVKTKELMLWLXXXXXXXXXXXXXKITFKTGTGLSDSFDA 135
KGKL ++ G+KTK +M+W+ K+ F G S S DA
Sbjct: 114 KGKLAEVEGMKTK-VMIWV---KVTCISADSSKVYFTAGIKKSRSRDA 157
>AT3G08890.1 | chr3:2706701-2707775 FORWARD LENGTH=171
Length = 170
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 28 ELLQELGLPKGLFPLDDIEEFGYNRANGFMWILHSKKKEHTFKKIKQTVSYATEVTAFVE 87
ELL+E GLP G+FP D + +N + + E +K + + T VT F+E
Sbjct: 56 ELLKEFGLPVGIFP-RDATNYEFNEQTRKLTVFIPSICEVGYKDT-SVLRFTTTVTGFLE 113
Query: 88 KGKLKKIAGVKTKELMLWLXXXXXXXXXXXXXKITFKTGTGLSDSFDA 135
KGKL + G+KTK +M+W+ K+ F G S S DA
Sbjct: 114 KGKLADVEGMKTK-VMIWV---KVTSISADSSKVHFTAGMKKSRSRDA 157
>AT2G03350.1 | chr2:1019733-1021071 REVERSE LENGTH=180
Length = 179
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 28 ELLQELGLPKGLFPLDDIEEFGYNRANGFMWILHSKKKEHTFKKIKQTVSYATEVTAFVE 87
+LL+E LP GLFP +I + ++ + + S E TFK + YAT V +
Sbjct: 61 DLLKEYNLPPGLFP-QNIICYEFDETKNKLTVFFSSPCEVTFKD-GSAIRYATRVKGILL 118
Query: 88 KGKLKKIAGVKTKELMLWLXXXXXXXXXXXXXKITFKTGTGLSDSFDA 135
+GKL + G+KTK +++W+ K+ F G S S D
Sbjct: 119 RGKLMGVEGMKTK-VLVWVKVTTISVESSKSDKLWFTAGVKKSRSKDV 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,636,190
Number of extensions: 97420
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 9
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)