BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0593600 Os11g0593600|AK071707
         (425 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25290.1  | chr5:8778592-8779785 FORWARD LENGTH=398             49   5e-06
AT1G57790.1  | chr1:21404578-21405636 REVERSE LENGTH=353           49   5e-06

>AT5G25290.1 | chr5:8778592-8779785 FORWARD LENGTH=398
          Length = 397

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 8   WTSLPDDILFLVMRKLGIPDLLNAGAVCSSWRSTYTSLRLPITDKSPCLLYSCXXXXXXX 67
           W+ +P DIL  V  +L   DL  A  VCS W S      L  T     +L+S        
Sbjct: 14  WSEIPMDILRSVFERLSFVDLHRAKIVCSHWYSCSKQSFLRKTRSPLVILFS------DD 67

Query: 68  XVATVYSPSSGATFKLRLPSPAFRRRYMVGSDHGWVATADELSNLQVINPLSGVQIDLPP 127
              T+Y+P     +K +     +R    + +   W    D  SNL +I+  S  +I+LPP
Sbjct: 68  GDCTLYNPEEARVYKSKRDLSRYR---FLANSGNWFLVLDPRSNLYIIDLFSEKKINLPP 124

Query: 128 V 128
           +
Sbjct: 125 L 125



>AT1G57790.1 | chr1:21404578-21405636 REVERSE LENGTH=353
          Length = 352

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 8   WTSLPDDILFLVMRKLGIPDLLNAGAVCSSWRSTYTSLRLPITDKSPCLLYSCXXXXXXX 67
           W  LP ++L  VM  L I D + A  VC SW     S+R  + DKSP L+Y         
Sbjct: 13  WKDLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVR--VIDKSPWLMY----FPETK 66

Query: 68  XVATVYSPSSGATFKLRLPSP--AFRRRYMVGSDHGWVATADE-LSNLQVINPLSGVQID 124
                Y PS+   + + LP     F  RY   S  GW+  + E  S+  + NP +   + 
Sbjct: 67  NTYDFYDPSNCKKYTMELPKSLVGFIVRY---SKDGWLLMSQEDSSHFVLFNPFTMDVVA 123

Query: 125 LP 126
           LP
Sbjct: 124 LP 125



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,220,077
Number of extensions: 458073
Number of successful extensions: 1026
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)