BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0593500 Os11g0593500|AK107550
         (487 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05970.1  | chr2:2308651-2309784 REVERSE LENGTH=378             54   1e-07
AT3G07870.1  | chr3:2510871-2512124 FORWARD LENGTH=418             52   5e-07

>AT2G05970.1 | chr2:2308651-2309784 REVERSE LENGTH=378
          Length = 377

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 26/137 (18%)

Query: 12  ADWTRLPEDILVTVFCQLEIPSLLLSGAVCASWHAAYRTFRRLRLPSPKQPPCLLY---- 67
           A W+ L  D+L  VF  L    L  + +VC+SWH+A R      +P+  Q P L+     
Sbjct: 8   ASWSELCPDVLRCVFELLSFSDLNRTRSVCSSWHSASRHC----VPTQNQIPWLILFPRN 63

Query: 68  --------SCDAYGPDAAGLYCPSTGAKYRIPVSCGGGGGFRNLTLIGSADGWVVAADEI 119
                   SC  + PD          + Y+       G GF     + +   W++  D +
Sbjct: 64  NVNNNNNNSCVLFVPD-------DRDSLYKTK---DLGVGFMLSNCLATYGSWILMMDRL 113

Query: 120 GNLRLLNPLTGAQAELP 136
            NL +LNPLTG + +LP
Sbjct: 114 CNLNILNPLTGEKIDLP 130



>AT3G07870.1 | chr3:2510871-2512124 FORWARD LENGTH=418
          Length = 417

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 17  LPEDILVTVFCQLEIPSLLLSGAVCASWHAAYRTFRRLRLPSPK-QPPCLLYSCDAYGPD 75
           LPEDI+  +F +L I S+     VC SW +      RL   S     PCLL  CD+  P 
Sbjct: 28  LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDS--PI 85

Query: 76  AAGL-YCPSTGAKYRIPV---SCGGGGGFRNLTLIGSADGWVVAADEIGN--LRLLNPLT 129
             GL +   +  + RI     +           ++GS +G +  +D + N  L L NP T
Sbjct: 86  RNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLYNPFT 145

Query: 130 GAQAELPPVSTMHH 143
               ELP  S  +H
Sbjct: 146 TNSLELPECSNKYH 159



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,067,730
Number of extensions: 483103
Number of successful extensions: 1078
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 2
Length of query: 487
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 385
Effective length of database: 8,310,137
Effective search space: 3199402745
Effective search space used: 3199402745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)