BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0592200 Os11g0592200|AK121127
         (146 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04720.1  | chr3:1285691-1286531 REVERSE LENGTH=213            192   6e-50

>AT3G04720.1 | chr3:1285691-1286531 REVERSE LENGTH=213
          Length = 212

 Score =  192 bits (487), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 101/121 (83%), Gaps = 1/121 (0%)

Query: 26  QEASNVRATYHYYNPQQNNWDLNKVSAYCATWDANKPLSWRQKYGWTAFCGPAGPRGRDS 85
           + ASNVRATYH+YNP QNNWDL  VSAYC+TWDA+KP +WR KYGWTAFCGPAGPRG+ S
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 86  CGKCIQVKNRGTGATIIARIVDQCSNGGLDLDYETIFKKIDTDGRGYQMGHLQVDYKFVN 145
           CGKC++VKN  T A +  RIVDQCSNGGLDLD   +F +IDTDG GYQ GHL VDY+FV+
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVA-MFNQIDTDGFGYQQGHLIVDYQFVD 190

Query: 146 C 146
           C
Sbjct: 191 C 191



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,138,543
Number of extensions: 126751
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)