BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0591800 Os11g0591800|J100053D19
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04720.1  | chr3:1285691-1286531 REVERSE LENGTH=213            174   2e-44

>AT3G04720.1 | chr3:1285691-1286531 REVERSE LENGTH=213
          Length = 212

 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 93/118 (78%), Gaps = 1/118 (0%)

Query: 32  VRATYHFYRPAANGWDLTATGAFCSTWDAGKPFDWRSKYEWTAFCGPVGPTGRDSCGKCL 91
           VRATYHFY PA N WDL A  A+CSTWDA KP+ WRSKY WTAFCGP GP G+ SCGKCL
Sbjct: 77  VRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCL 136

Query: 92  RVTNRVTGAQTTARIVDKCANGGLDLDWDTVFSKIDTDGQGFQRGHLTVDYSFVNCGD 149
           RV N  T A  T RIVD+C+NGGLDLD   +F++IDTDG G+Q+GHL VDY FV+CG+
Sbjct: 137 RVKNTRTNAAVTVRIVDQCSNGGLDLDV-AMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,275,609
Number of extensions: 128464
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)