BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0586300 Os11g0586300|AK072257
         (537 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55760.1  | chr3:20700648-20702886 FORWARD LENGTH=579          503   e-142
AT1G42430.1  | chr1:15891512-15894322 FORWARD LENGTH=427          196   4e-50

>AT3G55760.1 | chr3:20700648-20702886 FORWARD LENGTH=579
          Length = 578

 Score =  503 bits (1295), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/386 (63%), Positives = 302/386 (78%), Gaps = 9/386 (2%)

Query: 144 TPGPDFWSWLPPVENSTKLGEIDTGLKPSEKLDSFAGQPDLLMEKEQSEDILSLPFETSF 203
           TPGPDFWSW PP    +++  +D  L+  EK   F   P+ ++EK++S D LS+P+E+  
Sbjct: 194 TPGPDFWSWTPP--QGSEISSVD--LQAVEKPAEFPTLPNPVLEKDKSADSLSIPYESML 249

Query: 204 F-KKEDRSLPPFQSFAEP-ENVESEPSI-TADAEETFEDQFSKNXXXXXXXXXXSDEKSS 260
             ++   ++PPF+S  E  +  E++PS  T   E   +   S N           DE S+
Sbjct: 250 SSERHSFTIPPFESLIEVRKEAETKPSSETLSTEHDLDLISSANAEEVARVLDSLDESST 309

Query: 261 HGVRPDGSLWWKETGVEQRPDGVTCKWTVIRGVSADGAVEWEDKYWEASDRFDHKELGSE 320
           HGV  DG  WWK+TGVE+RPDGV C+WT+IRGV+ADG VEW+DKYWEASD F  KELGSE
Sbjct: 310 HGVSEDGLKWWKQTGVEKRPDGVVCRWTMIRGVTADGVVEWQDKYWEASDDFGFKELGSE 369

Query: 321 KSGRDATGNVWREYWKESMWQDFTCGVMHMEKTADKWGQNGKGEQWQEQWWEHYDSSGKA 380
           KSGRDATGNVWRE+W+ESM Q+   GV+HMEKTADKWG++G+G++WQE+WWEHYD++GK+
Sbjct: 370 KSGRDATGNVWREFWRESMSQE--NGVVHMEKTADKWGKSGQGDEWQEKWWEHYDATGKS 427

Query: 381 EKWADKWCSLDPNTPLDVGHAHVWHERWGEKYDGCGGSAKYTDKWAERSEGDGWSKWGDK 440
           EKWA KWCS+D NTPLD GHAHVWHERWGEKYDG GGS KYTDKWAER  GDGW KWGDK
Sbjct: 428 EKWAHKWCSIDRNTPLDAGHAHVWHERWGEKYDGQGGSTKYTDKWAERWVGDGWDKWGDK 487

Query: 441 WDEHFDPNGHGVKQGETWWAGKYGDRWNRTWGEHHNCTGWVHKYGRSSSGEHWDTHVPQD 500
           WDE+F+P+  GVKQGETWW GK+GDRWNR+WGE HN +GWVHKYG+SSSGEHWDTHVPQ+
Sbjct: 488 WDENFNPSAQGVKQGETWWEGKHGDRWNRSWGEGHNGSGWVHKYGKSSSGEHWDTHVPQE 547

Query: 501 TWYERFPHFGFEHCFNNSVQLRSVKR 526
           TWYE+FPHFGF HCF+NSVQLR+VK+
Sbjct: 548 TWYEKFPHFGFFHCFDNSVQLRAVKK 573



>AT1G42430.1 | chr1:15891512-15894322 FORWARD LENGTH=427
          Length = 426

 Score =  196 bits (497), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/275 (42%), Positives = 167/275 (60%), Gaps = 15/275 (5%)

Query: 262 GVRPDGSLWWKETGVEQRPDGVTCKWTVIRGVSADGAVEWEDKYWEASDRFDHKELGSEK 321
           G   DGS W++E+G +   +G  C+W+ + G S DG+ EW + +WE SD   +KELG EK
Sbjct: 145 GTNEDGSSWFRESGHDLGDNGYRCRWSRMGGRSHDGSSEWTETWWEKSDWTGYKELGVEK 204

Query: 322 SGRDATGNVWREYWKESMWQDFTCGVMHMEKTADKWGQNG-KGEQWQEQWWEHYDSSGKA 380
           SG+++ G+ W E W+E + QD    +  +E++A K  ++G +   W E+WWE YD+ G  
Sbjct: 205 SGKNSEGDSWWETWQEVLHQDEWSNLARIERSAQKQAKSGTENAGWYEKWWEKYDAKGWT 264

Query: 381 EKWADKWCSLDPNTPLDVGHAHVWHERWGEKYDGCGGSAKYTDKWAERSEGDGWSKWGDK 440
           EK A K+  L+  +         W E+WGE YDG G   K+TDKWAE   G   +KWGDK
Sbjct: 265 EKGAHKYGRLNEQS---------WWEKWGEHYDGRGSVLKWTDKWAETELG---TKWGDK 312

Query: 441 WDEHFDPNGHGVKQGETWWAGKYGDRWNRTWGEHHNCTGWVHKYGRSSSGEHWDTHVPQD 500
           W+E F  +G G +QGETW      DRW+RTWGE H   G VHKYG+S++GE WD  V ++
Sbjct: 313 WEEKF-FSGIGSRQGETWHVSPNSDRWSRTWGEEHFGNGKVHKYGKSTTGESWDIVVDEE 371

Query: 501 TWYERFPHFGFEHCFNNSVQLRSVK-RQTPKNTKP 534
           T+YE  PH+G+     +S QL S++ R+ P    P
Sbjct: 372 TYYEAEPHYGWADVVGDSTQLLSIQPRERPPGVYP 406



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.132    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,862,759
Number of extensions: 604922
Number of successful extensions: 1003
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 4
Length of query: 537
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 434
Effective length of database: 8,282,721
Effective search space: 3594700914
Effective search space used: 3594700914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)