BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0584100 Os11g0584100|AK106960
(496 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22345.1 | chr3:7899215-7900219 FORWARD LENGTH=335 62 9e-10
AT4G22165.1 | chr4:11734328-11735419 FORWARD LENGTH=364 60 3e-09
AT4G22180.1 | chr4:11738574-11739782 FORWARD LENGTH=403 56 5e-08
AT4G22060.1 | chr4:11687620-11688819 FORWARD LENGTH=400 55 1e-07
AT2G05970.1 | chr2:2308651-2309784 REVERSE LENGTH=378 52 8e-07
>AT3G22345.1 | chr3:7899215-7900219 FORWARD LENGTH=335
Length = 334
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 25/248 (10%)
Query: 57 PELSQDMLMEIFALLEIPDLVRAGSVCQSWRSAYTSLRDMGQYKQQTPCLLYTTESSGEK 116
P L+ D++ IF L + RA S+ W S ++ + TP L+ S+
Sbjct: 20 PVLAPDLIRSIFERLNFAEFHRAMSISLDWYST----AELCYRQNPTPWLILF--SNYRH 73
Query: 117 VSC-LYSLVEKRAFRLTLPGTPLHKRLPIGSSHGWVVTADELSELHLVNPITGQQIALPP 175
+SC L+ + + + + G H+ + +S W++ D ++ +L+N T ++I LP
Sbjct: 74 ISCRLFDPLHDKTYVIRDLGFDFHRSCCLATSGSWLLMLDHRTDFYLLNLFTRERICLPT 133
Query: 176 VITIEQVKPIFNDIGVVQGYKIGWYCAEKDYGDPYGEPSPILTPSELRDHLYYKAFVFPD 235
+ I+ + F +G K Y + Y S L+ + ++ A ++ D
Sbjct: 134 LEAIDGWQMKFERVGESDFLKTF------TYREGYRSYSSGLSTKVVIEN----AVLWVD 183
Query: 236 PLTRSFIVV-VIHYPFCQLSFARVGDDKWTW----LPHNTRYRDCVYHDGLLYALTSHGQ 290
+R ++VV I C ++ + GD+ TW L N D V+ + LY L +
Sbjct: 184 ERSRDYLVVWSIE---CFFAYHKKGDNNKTWKVIQLKKNEECSDIVFRESKLYVLNPNLN 240
Query: 291 IDAFDITA 298
I FD ++
Sbjct: 241 ITVFDFSS 248
>AT4G22165.1 | chr4:11734328-11735419 FORWARD LENGTH=364
Length = 363
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 146/359 (40%), Gaps = 60/359 (16%)
Query: 58 ELSQDMLMEIFALLEIPDLVRAGSVCQSWRSAYTSLRDMGQYKQQTPCLLYTTESSGEKV 117
EL D+L +F L + + RA SVC + Y+ R +Q +L+ E + +
Sbjct: 12 ELPLDLLNLVFKRLSLVNFQRAKSVCST---RYSVSRQCVPERQIALLILFPKEDNTDNS 68
Query: 118 SC-LYSLVEK-RAFRLTLPGTPLHKRLPIGSSHGWVVTADELSELHLVNPITGQQIALPP 175
+C L++ EK + +++ G K + + W++ D L+++N T ++I LPP
Sbjct: 69 TCKLFNPDEKDKLYKMQDLGVEFAKSVCRATYGSWLLMQDSKYHLYILNIFTRKRINLPP 128
Query: 176 VITIEQVKPIFNDIGVVQGYKIGWYCAEKDYGD-PYGEPSPILTPSELRDHLYYKAFVFP 234
V + +G+V+ + + +G + SP+ +
Sbjct: 129 VES---------QLGMVKIERTIYDWFHFSHGHYSFSLSSPVF---------------WI 164
Query: 235 DPLTRSFIVVVIHYPFCQLSFARVGDDKWTWLPHNTRYRDCVYHDGLLYALTSHGQIDAF 294
D ++ +IV+ +C + +A+ GD W +P + + D VY D LY L+S G
Sbjct: 165 DEESKDYIVMWGLGVYC-VVYAKKGDTSWNQIPQTSYFYDMVYKDHKLYFLSSTGTFQIL 223
Query: 295 DITASVVTRKEIIKHMKGISESMYIIRAPWGDLLQVWRTVDAAEQQDGDDDTLCYETEDG 354
D + + + + + + + + + ++WR
Sbjct: 224 DFSEEMDNKTSKVVCLLD-RKLVVTVTGKALKVAKMWR---------------------- 260
Query: 355 IVPVMRTKEIKVFKVDMAANKLVQINSLPYHVLFLGHNQSICLRAEEYPQLRANHVYFT 413
P RT +VFK+ + + +++SL L L + I + A + + N +YF+
Sbjct: 261 --PTYRTWSFRVFKISSSGYE--KLDSLGDEALLL--DLGITVLASDVEGFKRNSIYFS 313
>AT4G22180.1 | chr4:11738574-11739782 FORWARD LENGTH=403
Length = 402
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 30/234 (12%)
Query: 58 ELSQDMLMEIFALLEIPDLVRAGSVCQSWRSAYTSLRDMGQYKQQTPCLLYTTESSGEKV 117
EL D+L +F L + RA SVC SW S Q P L+ E
Sbjct: 23 ELPLDLLTAVFERLSYANFQRAKSVCSSWHSG-----SRQSVPIQIPWLILFPEYDNNNS 77
Query: 118 SCLYSLVEK-RAFRLTLPGTPLHKRLPIGSSHGWVVTADELSELHLVNPITGQQIALPPV 176
L++ EK + +++ G K + + W++ D L L+++N T +++ LPP
Sbjct: 78 CTLFNPEEKGQVYKMKDLGVEFSKSVCTATYGSWLLMRDPLYNLYILNLFTHERVNLPPF 137
Query: 177 ITIEQVKPIFNDIGVVQGYKI--GWYCAEKDY-GDPYGEPSPILTPSELRDHLYYKAFVF 233
+ +G+V+ + W+ + Y G Y + IL+ +
Sbjct: 138 ES---------QLGMVKIERTIYDWFHSTLHYNGKEYHKRIRILS-----------TVFW 177
Query: 234 PDPLTRSFIVVVIHYPFCQLSFARVGDDKWTWLPHNTRYRDCVYHDGLLYALTS 287
D T+ ++V+ C + +++ GD W +P + VY D LY TS
Sbjct: 178 IDEKTKDYVVIWGLGSSC-VVYSKKGDKCWNQIPETSNCHHMVYKDHKLYFSTS 230
>AT4G22060.1 | chr4:11687620-11688819 FORWARD LENGTH=400
Length = 399
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 22/257 (8%)
Query: 46 PPPMETQAADLPELSQDMLMEIFALLEIPDLVRAGSVCQSWRSAYTSLRDMGQYKQQTPC 105
PP + + + +L D+L+ +F L D R SVC +W A M +Q P
Sbjct: 3 PPSLMSDGSSWSKLPLDLLIMVFERLGFVDFQRTKSVCLAWLYA----SRMSAPNKQIPW 58
Query: 106 LLYTTESSGEKVSCLYSLVEK-RAFRLTLPGTPLHKRLPIGSSHGWVVTADELSELHLVN 164
L+ E G+ L++ EK + +R+ G + W+ D +L+++N
Sbjct: 59 LIMFPE-KGKDFCLLFNSEEKEKIYRIQNLGVEFANSHCLAIYGSWLFMRDPRYKLYIMN 117
Query: 165 PITGQQIALPPVITIEQVKPIFNDIGVVQGYKIGWYCAEKDYGDPYGEPSPILTPSELRD 224
T ++I LP V+ F I + Q +Y D D + + I ++ D
Sbjct: 118 LFTRERINLP------SVESQFGRIKIEQINDDLFYRKVDDEYDYHPKRHMI----DISD 167
Query: 225 HLYYKAFVFPDPLTRSFIVV-VIHYPFCQLSFARVGDDKWTWLPHNTRYRDCVYHDGLLY 283
H+ ++ D T+ ++V+ + + + R GD+ W + + + VY D +Y
Sbjct: 168 HI-----LWIDDKTKDYVVMWSFECGYTYMVYCRTGDNIWNYRSLDISTVNIVYKDHKMY 222
Query: 284 ALTSHGQIDAFDITASV 300
+ + D +
Sbjct: 223 LYSYTRDVKVLDFCEDI 239
>AT2G05970.1 | chr2:2308651-2309784 REVERSE LENGTH=378
Length = 377
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 51 TQAADLPELSQDMLMEIFALLEIPDLVRAGSVCQSWRSAYTSLRDMGQYKQQTPCLLY-- 108
+ A EL D+L +F LL DL R SVC SW SA R + Q P L+
Sbjct: 5 NKKASWSELCPDVLRCVFELLSFSDLNRTRSVCSSWHSAS---RHCVPTQNQIPWLILFP 61
Query: 109 -TTESSGEKVSCLYSLVEKR--AFRLTLPGTPLHKRLPIGSSHGWVVTADELSELHLVNP 165
++ SC+ + + R ++ G + + W++ D L L+++NP
Sbjct: 62 RNNVNNNNNNSCVLFVPDDRDSLYKTKDLGVGFMLSNCLATYGSWILMMDRLCNLNILNP 121
Query: 166 ITGQQIALP 174
+TG++I LP
Sbjct: 122 LTGEKIDLP 130
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,264,726
Number of extensions: 424092
Number of successful extensions: 1173
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1180
Number of HSP's successfully gapped: 5
Length of query: 496
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,282,721
Effective search space: 3255109353
Effective search space used: 3255109353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)